Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H4K32_RS19205 Genome accession   NZ_CP059855
Coordinates   3850703..3851602 (-) Length   299 a.a.
NCBI ID   WP_182274890.1    Uniprot ID   -
Organism   Bacillus velezensis strain Pm9     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3845703..3856602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4K32_RS19190 xerC 3846087..3847004 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  H4K32_RS19195 trmFO 3847074..3848381 (-) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  H4K32_RS19200 topA 3848446..3850521 (-) 2076 WP_003154274.1 type I DNA topoisomerase -
  H4K32_RS19205 dprA 3850703..3851602 (-) 900 WP_182274890.1 DNA-processing protein DprA Machinery gene
  H4K32_RS19210 sucD 3851667..3852569 (-) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  H4K32_RS19215 sucC 3852598..3853755 (-) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  H4K32_RS19220 - 3853930..3854211 (-) 282 WP_003154284.1 FlhB-like flagellar biosynthesis protein -
  H4K32_RS19225 - 3854208..3855911 (-) 1704 WP_182274891.1 glycosyl transferase -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32767.87 Da        Isoelectric Point: 7.4812

>NTDB_id=472330 H4K32_RS19205 WP_182274890.1 3850703..3851602(-) (dprA) [Bacillus velezensis strain Pm9]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSCYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=472330 H4K32_RS19205 WP_182274890.1 3850703..3851602(-) (dprA) [Bacillus velezensis strain Pm9]
TTGGATCAAGCATCGCGGTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTTATT
CCGATTTCATCAAGCTGCTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
ACCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGTTTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365