Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   H4K32_RS15445 Genome accession   NZ_CP059855
Coordinates   2985223..2985990 (+) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain Pm9     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2980223..2990990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4K32_RS15415 - 2980506..2982638 (+) 2133 WP_182274798.1 HD family phosphohydrolase -
  H4K32_RS15420 ybeY 2982639..2983112 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  H4K32_RS15425 - 2983093..2983467 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  H4K32_RS15430 - 2983591..2984001 (+) 411 WP_003152976.1 cytidine deaminase -
  H4K32_RS15435 era 2983982..2984887 (+) 906 WP_003152978.1 GTPase Era -
  H4K32_RS15440 - 2985043..2985186 (+) 144 WP_007408286.1 YqzL family protein -
  H4K32_RS15445 recO 2985223..2985990 (+) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  H4K32_RS15450 glyQ 2986292..2987179 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  H4K32_RS15455 glyS 2987172..2989211 (+) 2040 WP_003152986.1 glycine--tRNA ligase subunit beta -
  H4K32_RS15460 ccpN 2989312..2989950 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  H4K32_RS15465 - 2989976..2990788 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=472314 H4K32_RS15445 WP_003152982.1 2985223..2985990(+) (recO) [Bacillus velezensis strain Pm9]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=472314 H4K32_RS15445 WP_003152982.1 2985223..2985990(+) (recO) [Bacillus velezensis strain Pm9]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894