Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   H4K32_RS02885 Genome accession   NZ_CP059855
Coordinates   540982..541935 (-) Length   317 a.a.
NCBI ID   WP_003155063.1    Uniprot ID   -
Organism   Bacillus velezensis strain Pm9     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 535982..546935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4K32_RS02855 - 536134..537120 (-) 987 WP_003155054.1 ABC transporter ATP-binding protein -
  H4K32_RS02860 - 537294..538079 (-) 786 WP_012117278.1 DUF2268 domain-containing protein -
  H4K32_RS02865 fabF 538163..539401 (-) 1239 WP_003155056.1 beta-ketoacyl-ACP synthase II -
  H4K32_RS02870 - 539424..540362 (-) 939 WP_003155057.1 beta-ketoacyl-ACP synthase III -
  H4K32_RS02875 - 540530..540748 (+) 219 WP_003155059.1 hypothetical protein -
  H4K32_RS02880 comZ 540778..540969 (-) 192 WP_003155061.1 ComZ family protein Regulator
  H4K32_RS02885 med 540982..541935 (-) 954 WP_003155063.1 BMP family ABC transporter substrate-binding protein Regulator
  H4K32_RS02890 - 542025..542591 (-) 567 WP_041481852.1 hypothetical protein -
  H4K32_RS02895 - 542674..543408 (-) 735 WP_014304780.1 hypothetical protein -
  H4K32_RS02900 - 543669..543854 (+) 186 WP_003155069.1 YjzD family protein -
  H4K32_RS02905 - 543891..544070 (-) 180 WP_003155070.1 YjzC family protein -
  H4K32_RS02910 argF 544146..545117 (-) 972 WP_182275056.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35345.94 Da        Isoelectric Point: 4.5594

>NTDB_id=472266 H4K32_RS02885 WP_003155063.1 540982..541935(-) (med) [Bacillus velezensis strain Pm9]
MITRLVMIFSVLLLLSGCTQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHDFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNQTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=472266 H4K32_RS02885 WP_003155063.1 540982..541935(-) (med) [Bacillus velezensis strain Pm9]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCACACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTCCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCACCTTATGGGAGAAGCAA
TGGGTTTTTTCGGGGGAATGACGGCCGCCCATATGTCAAAAACCAATGAGGTCGGTGTCATCGCCTCCTTTTTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAGGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACGACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCGCTGGTGGACA
AAGCGTTTCAAGACAAAATCTCAGACCTTGTCAAAACGTATAATCAAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.549

100

0.785