Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   H4K32_RS00860 Genome accession   NZ_CP059855
Coordinates   210706..211170 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain Pm9     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 205706..216170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4K32_RS19490 - 206220..206765 (-) 546 Protein_166 hypothetical protein -
  H4K32_RS00840 fadH 206876..207640 (-) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  H4K32_RS00845 - 207784..208647 (+) 864 WP_063174788.1 metallophosphoesterase -
  H4K32_RS00850 - 208722..209216 (+) 495 WP_088037173.1 L,D-transpeptidase family protein -
  H4K32_RS00855 - 209291..210583 (+) 1293 WP_024085236.1 MFS transporter -
  H4K32_RS00860 kre 210706..211170 (+) 465 WP_003154622.1 YkyB family protein Regulator
  H4K32_RS00865 cheV 211213..212124 (-) 912 WP_014304917.1 chemotaxis protein CheV -
  H4K32_RS00870 - 212313..212474 (+) 162 WP_007409608.1 hypothetical protein -
  H4K32_RS00875 - 212675..213894 (+) 1220 Protein_174 aminotransferase A -
  H4K32_RS00880 - 213870..215690 (-) 1821 WP_003154628.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=472258 H4K32_RS00860 WP_003154622.1 210706..211170(+) (kre) [Bacillus velezensis strain Pm9]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=472258 H4K32_RS00860 WP_003154622.1 210706..211170(+) (kre) [Bacillus velezensis strain Pm9]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929