Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H4K32_RS00650 Genome accession   NZ_CP059855
Coordinates   174531..174815 (-) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain Pm9     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 169531..179815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4K32_RS00630 ade 169637..171370 (-) 1734 WP_058905991.1 adenine deaminase -
  H4K32_RS00635 ktrC 171519..172184 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  H4K32_RS00640 - 172225..173052 (-) 828 WP_025851463.1 gamma-glutamylcyclotransferase -
  H4K32_RS00645 - 173054..174358 (-) 1305 WP_014304932.1 ATP-binding protein -
  H4K32_RS00650 abrB 174531..174815 (-) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  H4K32_RS00655 mreBH 175084..176091 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  H4K32_RS00660 - 176163..176297 (+) 135 WP_003154559.1 protein YkpC -
  H4K32_RS00665 - 176398..177630 (+) 1233 WP_182274912.1 aminopeptidase -
  H4K32_RS00670 - 177660..178568 (-) 909 WP_044053169.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=472256 H4K32_RS00650 WP_024085249.1 174531..174815(-) (abrB) [Bacillus velezensis strain Pm9]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=472256 H4K32_RS00650 WP_024085249.1 174531..174815(-) (abrB) [Bacillus velezensis strain Pm9]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTGATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543