Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H4P35_RS16265 Genome accession   NZ_CP059848
Coordinates   3528140..3529501 (-) Length   453 a.a.
NCBI ID   WP_180098420.1    Uniprot ID   -
Organism   Achromobacter sp. 77     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3523140..3534501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4P35_RS16240 (H4P35_16205) - 3523550..3524551 (+) 1002 WP_180098422.1 tripartite tricarboxylate transporter substrate binding protein -
  H4P35_RS16245 (H4P35_16210) - 3524627..3525598 (+) 972 WP_056324225.1 tripartite tricarboxylate transporter substrate binding protein -
  H4P35_RS16250 (H4P35_16215) - 3525731..3526687 (+) 957 WP_226846231.1 2-hydroxyacid dehydrogenase -
  H4P35_RS16255 (H4P35_16220) - 3526850..3527068 (-) 219 WP_056324221.1 hypothetical protein -
  H4P35_RS16260 (H4P35_16225) - 3527332..3528111 (-) 780 WP_056324218.1 sulfite exporter TauE/SafE family protein -
  H4P35_RS16265 (H4P35_16230) radA 3528140..3529501 (-) 1362 WP_180098420.1 DNA repair protein RadA Machinery gene
  H4P35_RS16270 (H4P35_16235) - 3529920..3530606 (+) 687 WP_226846232.1 hypothetical protein -
  H4P35_RS16275 (H4P35_16240) hpaR 3530714..3531175 (+) 462 WP_056324211.1 homoprotocatechuate degradation operon regulator HpaR -
  H4P35_RS16280 (H4P35_16245) hpaI 3531214..3532014 (+) 801 WP_180098418.1 4-hydroxy-2-oxoheptanedioate aldolase -
  H4P35_RS16285 - 3532086..3533246 (-) 1161 Protein_3212 PepSY-associated TM helix domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48177.22 Da        Isoelectric Point: 6.9552

>NTDB_id=472216 H4P35_RS16265 WP_180098420.1 3528140..3529501(-) (radA) [Achromobacter sp. 77]
MAKTRTVYVCADCGGTTPKWQGKCPHCNAWNTLEETVESSAPAAASHRYAPLASSSPVRSLSEIEARETPRQPTGLDEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSETTNVLYVTGEESAEQVALRARRLGLQTGNVNLLAEIRLEAIQAA
VSEQKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDSSHAPN
PRRLTVGLEGNRLAMLLAVLHRHAGVSTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDRPLPRGLIAFGEVGLAGE
IRPAPRGQERLREAAKLGFSVALIPKANAPRQPIEGLEIWAVDRLDAALEKLR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=472216 H4P35_RS16265 WP_180098420.1 3528140..3529501(-) (radA) [Achromobacter sp. 77]
ATGGCAAAAACCCGTACCGTTTATGTGTGCGCCGACTGTGGCGGCACCACCCCGAAGTGGCAGGGCAAATGCCCGCATTG
CAACGCCTGGAACACGCTTGAAGAAACGGTGGAGTCGTCCGCGCCCGCGGCGGCCTCGCACCGCTATGCGCCGCTGGCCT
CGTCCAGCCCGGTGCGCAGCCTGTCCGAAATCGAGGCCCGCGAAACGCCGCGCCAGCCCACCGGCCTGGACGAATTCGAT
CGCGTGCTCGGCGGCGGCCTGGTGGCCGGCGCCGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACGCTGCT
CTTGCAGGCGCTGGCCTCGCTGTCCGAAACCACCAACGTGCTGTACGTGACGGGCGAAGAGTCCGCCGAACAGGTCGCGT
TGCGCGCGCGCCGGCTGGGCCTGCAAACCGGCAACGTCAACCTGCTGGCCGAAATCCGCCTCGAAGCCATCCAGGCCGCG
GTGTCGGAACAAAAGCCCACCGTCGCCGTCATCGACTCCATCCAGACGCTCTACAGCGGCGAACTCACGGCGGCGCCGGG
ATCGGTGTCGCAGGTGCGCGAGTGCGCGGCGCAGCTCACGCGGCTGGCCAAGCAGACGGGCATTGCCATCGTCATGATCG
GCCACGTCACCAAGGACGGCGCGCTGGCCGGACCGCGCGTGCTCGAGCACATCGTGGATACCGTGCTGTATTTCGAGGGG
GACACGCATTCGTCGTTCCGCCTGGTGCGCGCCTTCAAGAACCGCTTCGGCGCCGTCAACGAGCTTGGCGTGTTCGCCAT
GACCGACCGCGGCCTGCGCGGCGTGGCCAATCCGTCCGCACTGTTCCTGTCGCAGCACGAGCAGCAAGTCGCCGGTTCGT
GCGTCATGGCCACGCAGGAAGGCACGCGTCCGCTCCTCGTCGAGATCCAGGCGCTGGTCGACAGTTCCCACGCGCCCAAT
CCGCGCCGGCTGACGGTCGGCCTGGAAGGCAACCGTCTGGCCATGCTGCTGGCCGTGCTGCACCGGCACGCGGGCGTGTC
GACCTTCGACCAGGACGTCTTCGTCAATGCGGTCGGCGGCGTGCGCATCACCGAACCCGCGGCCGACCTGCCGGTGCTGC
TGGCCATCATGTCGTCGCTGCGCGACCGGCCGCTGCCGCGCGGGTTGATCGCATTCGGCGAGGTGGGCCTGGCCGGCGAG
ATCCGGCCCGCCCCGCGCGGCCAGGAACGCCTGCGCGAAGCCGCCAAACTGGGTTTCTCGGTGGCGCTCATTCCCAAGGC
CAACGCGCCGCGCCAGCCCATCGAAGGCCTGGAGATCTGGGCGGTCGATCGCCTGGACGCGGCACTGGAAAAGCTGCGTT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.439

100

0.508
  radA Streptococcus mitis SK321

46.476

100

0.466
  radA Streptococcus mitis NCTC 12261

46.137

100

0.461
  radA Streptococcus pneumoniae TIGR4

48.357

94.04

0.455
  radA Streptococcus pneumoniae R6

48.357

94.04

0.455
  radA Streptococcus pneumoniae Rx1

48.357

94.04

0.455
  radA Streptococcus pneumoniae D39

48.357

94.04

0.455