Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H4J01_RS16020 Genome accession   NZ_CP059840
Coordinates   3152936..3153565 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain E2348/69     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3147936..3158565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4J01_RS16005 helD 3148178..3150232 (-) 2055 WP_001340087.1 DNA helicase IV -
  H4J01_RS16010 yccF 3150355..3150801 (+) 447 WP_001261235.1 YccF domain-containing protein -
  H4J01_RS16015 yccS 3150811..3152973 (+) 2163 WP_000875040.1 YccS family putative transporter -
  H4J01_RS16020 sxy/tfoX 3152936..3153565 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H4J01_RS16025 sulA 3153783..3154292 (+) 510 WP_000288693.1 SOS-induced cell division inhibitor SulA -
  H4J01_RS16030 ompA 3154648..3155688 (+) 1041 WP_012578862.1 porin OmpA -
  H4J01_RS16035 matP 3155766..3156218 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  H4J01_RS16040 ycbZ 3156404..3158164 (+) 1761 WP_000156499.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=472172 H4J01_RS16020 WP_000839151.1 3152936..3153565(-) (sxy/tfoX) [Escherichia coli strain E2348/69]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=472172 H4J01_RS16020 WP_000839151.1 3152936..3153565(-) (sxy/tfoX) [Escherichia coli strain E2348/69]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995