Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GQF93_RS04530 Genome accession   NZ_CP059835
Coordinates   883085..883714 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain tcmA_3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 872007..894888 883085..883714 within 0


Gene organization within MGE regions


Location: 872007..894888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQF93_RS04470 (GQF93_04465) - 872007..873026 (+) 1020 WP_001372523.1 tyrosine-type recombinase/integrase -
  GQF93_RS04475 (GQF93_04470) yccA 873434..874093 (+) 660 WP_000375136.1 FtsH protease modulator YccA -
  GQF93_RS04480 (GQF93_04475) tusE 874184..874513 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  GQF93_RS04485 (GQF93_04480) yccX 874510..874788 (-) 279 WP_000048252.1 acylphosphatase -
  GQF93_RS04490 (GQF93_04485) rlmI 874883..876073 (+) 1191 WP_000116297.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  GQF93_RS04495 (GQF93_04490) hspQ 876131..876448 (+) 318 WP_001295356.1 heat shock protein HspQ -
  GQF93_RS04500 (GQF93_04495) yccU 876493..876906 (-) 414 WP_000665217.1 CoA-binding protein -
  GQF93_RS04505 (GQF93_04500) yccT 877079..877741 (+) 663 WP_000847791.1 DUF2057 family protein -
  GQF93_RS04510 (GQF93_04505) mgsA 877837..878295 (+) 459 WP_000424181.1 methylglyoxal synthase -
  GQF93_RS04515 (GQF93_04510) helD 878327..880381 (-) 2055 WP_000420536.1 DNA helicase IV -
  GQF93_RS04520 (GQF93_04515) yccF 880504..880950 (+) 447 WP_001261235.1 YccF domain-containing protein -
  GQF93_RS04525 (GQF93_04520) yccS 880960..883122 (+) 2163 WP_000875020.1 YccS family putative transporter -
  GQF93_RS04530 (GQF93_04525) sxy/tfoX 883085..883714 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  GQF93_RS04535 (GQF93_04530) sulA 883933..884442 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  GQF93_RS04540 (GQF93_04535) ompA 884799..885839 (+) 1041 WP_000750416.1 porin OmpA -
  GQF93_RS04545 (GQF93_04540) matP 885915..886367 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  GQF93_RS04550 (GQF93_04545) ycbZ 886553..888313 (+) 1761 WP_000156526.1 Lon protease family protein -
  GQF93_RS04555 (GQF93_04550) fabA 888382..888900 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  GQF93_RS04560 (GQF93_04555) rmf 888970..889137 (-) 168 WP_000828648.1 ribosome modulation factor -
  GQF93_RS04565 (GQF93_04560) pqiC 889393..889956 (-) 564 WP_000759123.1 membrane integrity-associated transporter subunit PqiC -
  GQF93_RS04570 (GQF93_04565) pqiB 889953..891593 (-) 1641 WP_000445533.1 intermembrane transport protein PqiB -
  GQF93_RS04575 (GQF93_04570) pqiA 891598..892851 (-) 1254 WP_000333176.1 membrane integrity-associated transporter subunit PqiA -
  GQF93_RS04580 (GQF93_04575) uup 892981..894888 (-) 1908 WP_212487498.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=472136 GQF93_RS04530 WP_000839153.1 883085..883714(-) (sxy/tfoX) [Escherichia coli strain tcmA_3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=472136 GQF93_RS04530 WP_000839153.1 883085..883714(-) (sxy/tfoX) [Escherichia coli strain tcmA_3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1