Detailed information NTG0472069

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6K23_RS20975
• Genome accession: NZ_CP070041
• Coordinates: 4371939..4372931 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1293
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4366939..4377931

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6K23_RS20945 (I6K23_20945)	ispD	4367000..4367710 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I6K23_RS20950 (I6K23_20950)	ispF	4367710..4368189 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6K23_RS20955 (I6K23_20955)	truD	4368186..4369235 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
I6K23_RS20960 (I6K23_20960)	surE	4369216..4369977 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6K23_RS20965 (I6K23_20965)	pcm	4369971..4370597 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
I6K23_RS20970 (I6K23_20970)	nlpD	4370782..4371876 (+)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
I6K23_RS20975 (I6K23_20975)	rpoS	4371939..4372931 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6K23_RS20980 (I6K23_20980)	-	4373109..4373660 (-)	552	WP_001179443.1	flavodoxin family protein	-
I6K23_RS20985 (I6K23_20985)	-	4373885..4374928 (+)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
I6K23_RS20990 (I6K23_20990)	ygbN	4375071..4376435 (-)	1365	WP_000104433.1	GntP family transporter	-
I6K23_RS20995 (I6K23_20995)	ygbM	4376524..4377300 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=472069 I6K23_RS20975 WP_000081550.1 4371939..4372931(+) (rpoS) [Escherichia coli strain FDAARGOS_1293]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=472069 I6K23_RS20975 WP_000081550.1 4371939..4372931(+) (rpoS) [Escherichia coli strain FDAARGOS_1293]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715