Detailed information NTG0471994

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6K67_RS22875
• Genome accession: NZ_CP070026
• Coordinates: 4696357..4697349 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1337
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4691357..4702349

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6K67_RS22855 (I6K67_22855)	otnK	4692132..4693394 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
I6K67_RS22860 (I6K67_22860)	ygbL	4693391..4694029 (+)	639	WP_001278994.1	aldolase	-
I6K67_RS22865 (I6K67_22865)	ygbM	4694034..4694810 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
I6K67_RS22870 (I6K67_22870)	ygbN	4694899..4696263 (+)	1365	WP_000104459.1	GntP family transporter	-
I6K67_RS22875 (I6K67_22875)	rpoS	4696357..4697349 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6K67_RS22880 (I6K67_22880)	nlpD	4697412..4698506 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
I6K67_RS22885 (I6K67_22885)	pcm	4698691..4699317 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I6K67_RS22890 (I6K67_22890)	surE	4699311..4700072 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6K67_RS22895 (I6K67_22895)	truD	4700053..4701102 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
I6K67_RS22900 (I6K67_22900)	ispF	4701099..4701578 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6K67_RS22905 (I6K67_22905)	ispD	4701578..4702288 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=471994 I6K67_RS22875 WP_000081550.1 4696357..4697349(-) (rpoS) [Escherichia coli strain FDAARGOS_1337]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=471994 I6K67_RS22875 WP_000081550.1 4696357..4697349(-) (rpoS) [Escherichia coli strain FDAARGOS_1337]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715