Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6K67_RS19210 Genome accession   NZ_CP070026
Coordinates   3917495..3918919 (+) Length   474 a.a.
NCBI ID   WP_057695882.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1337     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3912495..3923919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K67_RS19180 (I6K67_19180) - 3914149..3914616 (-) 468 Protein_3729 lytic transglycosylase domain-containing protein -
  I6K67_RS19185 (I6K67_19185) - 3914663..3915360 (+) 698 WP_095033700.1 IS1-like element IS1B family transposase -
  I6K67_RS19190 (I6K67_19190) - 3915395..3915676 (+) 282 WP_000022062.1 hypothetical protein -
  I6K67_RS19195 (I6K67_19195) - 3915765..3915932 (+) 168 WP_044782740.1 hypothetical protein -
  I6K67_RS19200 (I6K67_19200) - 3915963..3916154 (+) 192 WP_000132739.1 AlpA family phage regulatory protein -
  I6K67_RS19205 (I6K67_19205) - 3916135..3917313 (-) 1179 WP_001007954.1 site-specific integrase -
  I6K67_RS19210 (I6K67_19210) sbcB 3917495..3918919 (+) 1425 WP_057695882.1 exodeoxyribonuclease I Machinery gene
  I6K67_RS19215 (I6K67_19215) tsuB 3918962..3919189 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  I6K67_RS19220 (I6K67_19220) tsuA 3919203..3920261 (-) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  I6K67_RS19225 (I6K67_19225) plaP 3920440..3921798 (-) 1359 WP_204691538.1 APC family permease -
  I6K67_RS19230 (I6K67_19230) yoeI 3921788..3921850 (-) 63 WP_010723108.1 membrane protein YoeI -
  I6K67_RS19235 (I6K67_19235) yeeY 3922065..3922994 (-) 930 WP_204691539.1 LysR substrate-binding domain-containing protein -
  I6K67_RS19240 (I6K67_19240) yeeZ 3923040..3923864 (-) 825 WP_187195039.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54349.63 Da        Isoelectric Point: 5.3498

>NTDB_id=471982 I6K67_RS19210 WP_057695882.1 3917495..3918919(+) (sbcB) [Escherichia coli strain FDAARGOS_1337]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=471982 I6K67_RS19210 WP_057695882.1 3917495..3918919(+) (sbcB) [Escherichia coli strain FDAARGOS_1337]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTAGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

99.156

0.586