Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6K30_RS20605 Genome accession   NZ_CP069996
Coordinates   4258083..4259510 (-) Length   475 a.a.
NCBI ID   WP_001513843.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1300     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4253083..4264510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K30_RS20575 (I6K30_20580) yeeZ 4253138..4253962 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  I6K30_RS20580 (I6K30_20585) yeeY 4254008..4254937 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  I6K30_RS20585 (I6K30_20590) yoeI 4255152..4255214 (+) 63 WP_010723108.1 membrane protein YoeI -
  I6K30_RS20590 (I6K30_20595) plaP 4255204..4256562 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I6K30_RS20595 (I6K30_20600) tsuA 4256741..4257799 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  I6K30_RS20600 (I6K30_20605) tsuB 4257813..4258040 (+) 228 WP_083574903.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  I6K30_RS20605 (I6K30_20610) sbcB 4258083..4259510 (-) 1428 WP_001513843.1 exodeoxyribonuclease I Machinery gene
  I6K30_RS20610 (I6K30_20615) dacD 4259719..4260885 (+) 1167 WP_001513842.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6K30_RS20615 (I6K30_20620) sbmC 4261004..4261477 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  I6K30_RS20620 (I6K30_20625) yeeA 4261675..4262733 (+) 1059 WP_001200888.1 FUSC family protein -
  I6K30_RS20625 (I6K30_20630) tmaR 4262905..4263234 (+) 330 WP_000450409.1 DUF496 family protein -
  I6K30_RS20630 (I6K30_20635) - 4263335..4263517 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  I6K30_RS20635 (I6K30_20640) - 4263589..4263717 (+) 129 Protein_4075 transposase domain-containing protein -
  I6K30_RS20640 (I6K30_20645) - 4264006..4264086 (-) 81 Protein_4076 hypothetical protein -
  I6K30_RS20645 (I6K30_20650) yeeW 4264132..4264326 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54426.73 Da        Isoelectric Point: 5.4720

>NTDB_id=471820 I6K30_RS20605 WP_001513843.1 4258083..4259510(-) (sbcB) [Escherichia coli strain FDAARGOS_1300]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFAPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=471820 I6K30_RS20605 WP_001513843.1 4258083..4259510(-) (sbcB) [Escherichia coli strain FDAARGOS_1300]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCGCGCCAGAGTTTTTGCAGGGTTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581