Detailed information NTG0471807

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6K30_RS16670
• Genome accession: NZ_CP069996
• Coordinates: 3443643..3444635 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1300
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3438643..3449635

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6K30_RS16640 (I6K30_16645)	ispD	3438704..3439414 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I6K30_RS16645 (I6K30_16650)	ispF	3439414..3439893 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6K30_RS16650 (I6K30_16655)	truD	3439890..3440939 (+)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
I6K30_RS16655 (I6K30_16660)	surE	3440920..3441681 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6K30_RS16660 (I6K30_16665)	pcm	3441675..3442301 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
I6K30_RS16665 (I6K30_16670)	nlpD	3442486..3443580 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
I6K30_RS16670 (I6K30_16675)	rpoS	3443643..3444635 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6K30_RS16675 (I6K30_16680)	-	3444813..3445364 (-)	552	WP_001179442.1	flavodoxin family protein	-
I6K30_RS16680 (I6K30_16685)	-	3445589..3446632 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
I6K30_RS16685 (I6K30_16690)	ygbN	3446775..3448139 (-)	1365	WP_000104443.1	GntP family transporter	-
I6K30_RS16690 (I6K30_16695)	ygbM	3448228..3449004 (-)	777	WP_001136908.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=471807 I6K30_RS16670 WP_000081550.1 3443643..3444635(+) (rpoS) [Escherichia coli strain FDAARGOS_1300]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=471807 I6K30_RS16670 WP_000081550.1 3443643..3444635(+) (rpoS) [Escherichia coli strain FDAARGOS_1300]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715