Detailed information NTG0471736

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6K34_RS23930
• Genome accession: NZ_CP069990
• Coordinates: 4944945..4945937 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1304
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4939945..4950937

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6K34_RS23900 (I6K34_23900)	ispD	4940006..4940716 (+)	711	WP_204638289.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I6K34_RS23905 (I6K34_23905)	ispF	4940716..4941195 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6K34_RS23910 (I6K34_23910)	truD	4941192..4942241 (+)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
I6K34_RS23915 (I6K34_23915)	surE	4942222..4942983 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6K34_RS23920 (I6K34_23920)	pcm	4942977..4943603 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
I6K34_RS23925 (I6K34_23925)	nlpD	4943788..4944882 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
I6K34_RS23930 (I6K34_23930)	rpoS	4944945..4945937 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6K34_RS23935 (I6K34_23935)	-	4946115..4946666 (-)	552	WP_001179442.1	flavodoxin family protein	-
I6K34_RS23940 (I6K34_23940)	-	4946891..4947935 (+)	1045	Protein_4741	MBL fold metallo-hydrolase	-
I6K34_RS23945 (I6K34_23945)	ygbN	4948078..4949442 (-)	1365	WP_000104443.1	GntP family transporter	-
I6K34_RS23950 (I6K34_23950)	ygbM	4949531..4950307 (-)	777	WP_001136908.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=471736 I6K34_RS23930 WP_000081550.1 4944945..4945937(+) (rpoS) [Escherichia coli strain FDAARGOS_1304]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=471736 I6K34_RS23930 WP_000081550.1 4944945..4945937(+) (rpoS) [Escherichia coli strain FDAARGOS_1304]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715