Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H3303_RS26960 Genome accession   NZ_CP059738
Coordinates   6108214..6109581 (-) Length   455 a.a.
NCBI ID   WP_007909773.1    Uniprot ID   J2YZH4
Organism   Pseudomonas sp. 29A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6103214..6114581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3303_RS26935 (H3303_26935) - 6103343..6104053 (+) 711 WP_175553165.1 GntR family transcriptional regulator -
  H3303_RS26940 (H3303_26940) yjiA 6104152..6105123 (-) 972 WP_175553164.1 GTPase -
  H3303_RS26945 (H3303_26945) - 6105286..6105483 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  H3303_RS26950 (H3303_26950) - 6105499..6107565 (-) 2067 WP_016986185.1 carbon starvation CstA family protein -
  H3303_RS26955 (H3303_26955) - 6107725..6108093 (+) 369 WP_175553163.1 PilZ domain-containing protein -
  H3303_RS26960 (H3303_26960) radA 6108214..6109581 (-) 1368 WP_007909773.1 DNA repair protein RadA Machinery gene
  H3303_RS26965 (H3303_26965) - 6109625..6110161 (-) 537 WP_175553162.1 ankyrin repeat domain-containing protein -
  H3303_RS26970 (H3303_26970) katB 6110222..6111763 (-) 1542 WP_175553161.1 catalase KatB -
  H3303_RS26975 (H3303_26975) mscL 6112051..6112464 (+) 414 WP_016986181.1 large-conductance mechanosensitive channel protein MscL -
  H3303_RS26980 (H3303_26980) - 6112509..6113285 (-) 777 WP_175553160.1 ferredoxin--NADP reductase -
  H3303_RS26985 (H3303_26985) - 6113603..6114313 (+) 711 WP_175553159.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48773.25 Da        Isoelectric Point: 6.8987

>NTDB_id=471698 H3303_RS26960 WP_007909773.1 6108214..6109581(-) (radA) [Pseudomonas sp. 29A]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPTGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=471698 H3303_RS26960 WP_007909773.1 6108214..6109581(-) (radA) [Pseudomonas sp. 29A]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACTGAGTGCGGCGCAACCTTTCCCAAGTGGGCGGGCCAGTGCGGCGAGTG
CGGCGCCTGGAATACCCTGACTGAAACCATGATCGAGAGCGGTGGTGCCACGGCGCCGACCGGGCGCACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCATCGAAGAGATTCCGCGTTTCTCCACCGCGTCCGGTGAACTG
GATCGGGTCCTCGGTGGCGGTCTGGTCGATGGCTCGGTGGTGCTGATCGGCGGTGATCCTGGCATCGGCAAATCGACGAT
CCTGTTGCAGACCCTGTGCAATCTCGCCAAGAGCATGCCGGCCCTTTATGTCACTGGCGAAGAATCCCAGCAGCAAGTGG
CCATGCGCGCCCGGCGCCTCGGCTTGCCCCAGGATCAACTGCGGGTGATGACTGAAACCTGCATCGAAACCATCATCGCC
ACGGCCCGTCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAACAGCTGCAATCGGCACC
TGGCGGCGTATCGCAAGTGCGCGAGAGTGCGGCGTTGCTGGTGCGTTACGCCAAGCAAAGTGGTACGGCGATTTTCCTCG
TCGGCCACGTCACCAAGGAAGGCGCGCTGGCGGGTCCTCGCGTTCTCGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGTGAATCCGATGGGCGTTTGCGTTTGCTGCGTGCGGTGAAAAACCGTTTCGGCGCCGTTAACGAACTCGGTGTGTTCGG
CATGACCGACAAGGGGTTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTCACTCGCGCTCAGGAAGAAGTCCCCGGCA
GTGTGGTGATGGCGACGTGGGAGGGTACTCGACCGATGCTGGTGGAAGTGCAGGCACTGGTCGATGACAGTCATCTGGCC
AACCCGCGTCGGGTAACGCTGGGGCTGGATCAGAACCGTTTGGCGATGTTGCTCGCGGTTTTGCATCGCCATGGCGGCAT
TCCGACTCACGATCAGGATGTGTTCCTCAACGTGGTCGGTGGGGTGAAGGTGCTGGAGACGGCATCGGATCTGGCGTTGA
TGGCGGCGGTGATGTCGAGCCTGCGCAATCGGCCGTTGCCGCATGATCTGTTGGTGTTTGGTGAGGTCGGGCTGTCTGGT
GAAGTGCGCCCGGTGCCGAGCGGGCAGGAGCGTCTGAAGGAAGCGGCCAAGCATGGCTTCAAGCGGGCGATCGTGCCGAA
GGGCAATGCGCCGAAGGAATCGCCTCCGGGCTTGCAGATCATCGCCGTGACCCGCCTCGAACAGGCCCTCGACGCCCTCT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2YZH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464
  radA Streptococcus pneumoniae Rx1

46.272

100

0.464
  radA Streptococcus pneumoniae D39

46.272

100

0.464
  radA Streptococcus pneumoniae R6

46.272

100

0.464
  radA Streptococcus pneumoniae TIGR4

46.272

100

0.464