Detailed information NTG0471695

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H3303_RS26630
• Genome accession: NZ_CP059738
• Coordinates: 6041850..6042722 (+)
• Length: 290 a.a.
• NCBI ID: WP_175553182.1
• Uniprot ID: -
• Organism: Pseudomonas sp. 29A
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6036850..6047722

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H3303_RS26605 (H3303_26605)	-	6037034..6037330 (+)	297	WP_016986246.1	DUF2845 domain-containing protein	-
H3303_RS26610 (H3303_26610)	-	6037616..6037972 (-)	357	WP_016986244.1	BON domain-containing protein	-
H3303_RS26615 (H3303_26615)	-	6038270..6038701 (-)	432	WP_175553185.1	pilin	-
H3303_RS26620 (H3303_26620)	pilB	6038928..6040628 (+)	1701	WP_175553184.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H3303_RS26625 (H3303_26625)	pilC	6040631..6041848 (+)	1218	WP_175553183.1	type II secretion system F family protein	Machinery gene
H3303_RS26630 (H3303_26630)	pilD	6041850..6042722 (+)	873	WP_175553182.1	A24 family peptidase	Machinery gene
H3303_RS26635 (H3303_26635)	coaE	6042719..6043342 (+)	624	WP_175553181.1	dephospho-CoA kinase	-
H3303_RS26640 (H3303_26640)	yacG	6043339..6043539 (+)	201	WP_007959585.1	DNA gyrase inhibitor YacG	-
H3303_RS26645 (H3303_26645)	-	6043546..6043761 (-)	216	WP_008078491.1	hypothetical protein	-
H3303_RS26650 (H3303_26650)	-	6043827..6044516 (-)	690	WP_175553180.1	energy-coupling factor ABC transporter permease	-
H3303_RS26655 (H3303_26655)	-	6044634..6045260 (+)	627	WP_007909887.1	DUF1780 domain-containing protein	-
H3303_RS26660 (H3303_26660)	-	6045257..6045784 (+)	528	WP_175553179.1	MOSC domain-containing protein	-
H3303_RS26665 (H3303_26665)	-	6045836..6046009 (+)	174	WP_007909875.1	DUF3094 domain-containing protein	-
H3303_RS26670 (H3303_26670)	-	6046073..6047371 (+)	1299	WP_095121769.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32432.76 Da
• Isoelectric Point: 7.4001

>NTDB_id=471695 H3303_RS26630 WP_175553182.1 6041850..6042722(+) (pilD) [Pseudomonas sp. 29A]
MLIDELFALYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLERDWRQQAHDVLGLPGETPLPTYNLMLPHSECPHCTHRIR
PWENIPLLSYLWLRGRCSACAAPISKRYPLTELACALLSAFVAWHFGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVILLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=471695 H3303_RS26630 WP_175553182.1 6041850..6042722(+) (pilD) [Pseudomonas sp. 29A]
ATGCTTATCGACGAACTGTTTGCCCTGTATCCGCTGGCCTTTGTCTTCACTGCCCTGTTGCTGGGTCTGGTGGTCGGCAG
CTTTCTCAACGTGCTGATCTGGCGTCTGCCGAAAATGCTCGAGCGCGATTGGCGCCAGCAGGCCCACGACGTACTCGGCT
TGCCCGGCGAGACGCCACTGCCGACCTACAACCTGATGCTGCCGCACTCCGAATGCCCGCACTGCACCCACCGGATCCGT
CCGTGGGAAAACATTCCGCTGCTCAGTTATCTGTGGCTGCGGGGGCGCTGTTCCGCGTGCGCTGCACCTATCAGCAAACG
TTATCCGCTGACCGAACTGGCCTGCGCTCTGCTCTCGGCATTCGTGGCCTGGCATTTCGGCTTTGGCTGGCCGGCGTGCC
TGCTGATTGTCCTTACCTGGGGTCTGCTGGCGATGAGTCTGATCGACACCGAACATCAACTGCTGCCCGATGTGCTGGTG
CTGCCGTTGTTGTGGCTGGGGTTGATCGTCAACAGTTTCGGCTTGTTCGTGTCGTTGCACGATGCGCTGTGGGGCGCGGT
GGCCGGTTACCTGGCGCTGTGGTCAGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGCATCGGCCACGGTGATT
TCAAGCTGTTGGCGCTACTCGGCGCGTGGGGTGGCTGGCAGATTCTGCCACTGACGATTCTGTTGTCATCACTGGTCGGA
GCCATTATCGGGGTGATTTTACTACGCCTGCGCGAACAGAAAACCTCGACACCGATCCCCTTCGGCCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.028	97.241	0.545
pilD	Vibrio campbellii strain DS40M4	53.546	97.241	0.521
pilD	Acinetobacter baumannii D1279779	49.648	97.931	0.486
pilD	Acinetobacter nosocomialis M2	49.648	97.931	0.486
pilD	Neisseria gonorrhoeae MS11	47.778	93.103	0.445