Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CTDEC_RS01560 Genome accession   NC_017434
Coordinates   331369..332733 (+) Length   454 a.a.
NCBI ID   WP_009871646.1    Uniprot ID   O84300
Organism   Chlamydia trachomatis D-EC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 326369..337733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTDEC_RS01535 (CTDEC_0293) accD 326431..327357 (-) 927 WP_009871641.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  CTDEC_RS01540 (CTDEC_0294) - 327429..328049 (-) 621 WP_009871642.1 superoxide dismutase -
  CTDEC_RS01545 (CTDEC_0295) - 328181..329962 (-) 1782 WP_009871643.1 phospho-sugar mutase -
  CTDEC_RS01550 (CTDEC_0296) - 330114..330581 (-) 468 WP_009871644.1 DUF5070 domain-containing protein -
  CTDEC_RS01555 (CTDEC_0297) rnc 330690..331385 (+) 696 WP_009871645.1 ribonuclease III -
  CTDEC_RS01560 (CTDEC_0298) radA 331369..332733 (+) 1365 WP_009871646.1 DNA repair protein RadA Machinery gene
  CTDEC_RS01565 (CTDEC_0299) - 332711..333436 (+) 726 WP_009871647.1 hydroxymethylbilane synthase -
  CTDEC_RS01570 (CTDEC_0300) - 333829..334176 (+) 348 WP_010725152.1 hypothetical protein -
  CTDEC_RS01575 (CTDEC_0301) pknD 334229..337033 (-) 2805 WP_009871648.1 serine/threonine-protein kinase PknD -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49783.25 Da        Isoelectric Point: 7.5070

>NTDB_id=47159 CTDEC_RS01560 WP_009871646.1 331369..332733(+) (radA) [Chlamydia trachomatis D-EC]
MTTKIKTQWTCTECGTHSPKWLGQCSGCLQWNTLVEERTAPKLNTSSYSSSSSIPIPLNNVEFQEEIRIHTQAQGWNRLL
GGGTVRGSLALLGGEPGIGKSTLLLQISSQFAAAGHKVLYVCGEESVSQTSLRAQRLQISSNNIFLFPETNLEDIKQQID
NIAPDILVIDSIQIIFSPSLSSAPGSVAQVRETTAELMHIAKQKQITTFIIGHVTKSGEIAGPRILEHLVDTVLYFEGNA
HANYRMIRSVKNRFGPTNELLILSMHTDGLREVENPSGLFLQEKIVETTGSTIIPIVEGSETLLIEVQALVSSSPFSNPV
RKTSGFDPNRFSLLLAVLEKRANVKLYTSDVFLSIAGGLKITQPSADLGAVLSVVSSLYNRYLPKNYTYTGEIGLGGEIR
HVSHMEHRIKESIIMGFKGIVMPFGQIKGLPKEFLDQIDIIGVKTIKDAVRLLQ

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=47159 CTDEC_RS01560 WP_009871646.1 331369..332733(+) (radA) [Chlamydia trachomatis D-EC]
ATGACAACAAAAATTAAAACACAGTGGACGTGTACAGAATGTGGCACACATTCTCCAAAATGGTTGGGACAATGTTCTGG
ATGTCTCCAGTGGAATACACTAGTCGAAGAAAGAACAGCTCCTAAACTAAACACATCTTCTTACTCCTCTAGCTCTTCTA
TTCCCATACCACTAAACAATGTGGAATTTCAGGAAGAAATACGAATTCATACCCAAGCTCAAGGCTGGAATCGCCTTCTA
GGAGGAGGAACGGTCCGAGGTAGCCTCGCTCTATTGGGAGGAGAGCCTGGCATAGGAAAGTCTACTTTACTACTTCAAAT
TTCCTCACAATTCGCGGCAGCTGGTCATAAAGTGTTGTACGTTTGCGGAGAAGAATCCGTGTCCCAAACTTCATTACGAG
CCCAACGCCTGCAAATCTCTAGCAACAATATTTTCCTATTCCCAGAAACAAATCTTGAAGACATCAAACAACAGATTGAT
AACATTGCTCCAGACATATTAGTTATCGACTCTATCCAGATCATTTTTTCTCCATCCTTAAGCTCTGCTCCAGGATCGGT
TGCTCAAGTGAGAGAAACGACCGCAGAGCTCATGCATATAGCAAAACAAAAACAGATCACAACCTTTATTATTGGACATG
TCACTAAATCTGGAGAAATCGCTGGCCCACGTATCCTAGAACACTTAGTAGACACTGTTCTCTATTTTGAAGGTAATGCG
CATGCTAATTACCGTATGATTCGCTCTGTTAAGAATCGTTTCGGCCCAACCAATGAATTATTAATTTTATCCATGCATAC
AGATGGATTACGCGAAGTAGAAAATCCGTCAGGTCTCTTTCTACAAGAAAAAATTGTAGAAACTACAGGCTCTACCATTA
TCCCTATTGTAGAAGGCTCTGAAACTCTTCTTATAGAAGTTCAGGCTCTCGTTTCTTCATCCCCATTTTCTAATCCTGTA
CGAAAAACATCCGGATTTGATCCAAACCGATTTTCTTTACTCTTAGCTGTTTTAGAAAAAAGAGCGAATGTTAAATTATA
TACATCCGATGTCTTCCTTTCTATCGCTGGAGGCTTGAAAATCACACAACCTTCGGCAGACTTAGGAGCGGTGTTATCGG
TGGTGTCTTCCCTATATAACCGCTATTTACCTAAAAATTATACCTATACTGGAGAGATCGGCCTAGGAGGAGAAATTCGT
CACGTTTCACACATGGAACACCGCATAAAAGAAAGCATTATTATGGGGTTTAAAGGTATCGTGATGCCTTTTGGGCAGAT
AAAAGGCTTACCTAAAGAATTTCTGGATCAAATTGATATTATTGGAGTAAAAACAATTAAAGATGCTGTCCGCTTACTAC
AATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(76-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O84300

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

100

0.491
  radA Streptococcus pneumoniae Rx1

47.124

99.559

0.469
  radA Streptococcus pneumoniae D39

47.124

99.559

0.469
  radA Streptococcus pneumoniae R6

47.124

99.559

0.469
  radA Streptococcus pneumoniae TIGR4

47.124

99.559

0.469
  radA Streptococcus mitis NCTC 12261

46.903

99.559

0.467
  radA Streptococcus mitis SK321

46.444

99.119

0.46

Multiple sequence alignment