Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I6K21_RS03220 Genome accession   NZ_CP069980
Coordinates   735131..735868 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain FDAARGOS_1291     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 730131..740868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K21_RS03205 (I6K21_03205) clpC 730585..733158 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  I6K21_RS03210 (I6K21_03210) yfiH 733288..734019 (-) 732 WP_000040163.1 purine nucleoside phosphorylase YfiH -
  I6K21_RS03215 (I6K21_03215) rluD 734016..734996 (-) 981 WP_000079106.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6K21_RS03220 (I6K21_03220) comL 735131..735868 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  I6K21_RS03225 (I6K21_03225) tnpA 736059..736517 (+) 459 WP_000526135.1 IS200/IS605-like element IS200C family transposase -
  I6K21_RS03230 (I6K21_03230) raiA 736850..737191 (+) 342 WP_000178463.1 ribosome-associated translation inhibitor RaiA -
  I6K21_RS03235 (I6K21_03235) pheL 737295..737342 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  I6K21_RS03240 (I6K21_03240) pheA 737441..738601 (+) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  I6K21_RS03245 (I6K21_03245) tyrA 738644..739765 (-) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  I6K21_RS03250 (I6K21_03250) aroF 739776..740846 (-) 1071 WP_001168043.1 3-deoxy-7-phosphoheptulonate synthase AroF -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=471582 I6K21_RS03220 WP_000197686.1 735131..735868(+) (comL) [Escherichia coli strain FDAARGOS_1291]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=471582 I6K21_RS03220 WP_000197686.1 735131..735868(+) (comL) [Escherichia coli strain FDAARGOS_1291]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAACCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376