Detailed information NTG0471568

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6K29_RS23685
• Genome accession: NZ_CP069978
• Coordinates: 4949444..4950436 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1299
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4944444..4955436

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6K29_RS23655 (I6K29_23655)	ispD	4944505..4945215 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I6K29_RS23660 (I6K29_23660)	ispF	4945215..4945694 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6K29_RS23665 (I6K29_23665)	truD	4945691..4946740 (+)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
I6K29_RS23670 (I6K29_23670)	surE	4946721..4947482 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6K29_RS23675 (I6K29_23675)	pcm	4947476..4948102 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
I6K29_RS23680 (I6K29_23680)	nlpD	4948287..4949381 (+)	1095	WP_306305124.1	murein hydrolase activator NlpD	-
I6K29_RS23685 (I6K29_23685)	rpoS	4949444..4950436 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6K29_RS23690 (I6K29_23690)	-	4950614..4951165 (-)	552	WP_001179442.1	flavodoxin family protein	-
I6K29_RS23695 (I6K29_23695)	-	4951390..4952433 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
I6K29_RS23700 (I6K29_23700)	ygbN	4952576..4953940 (-)	1365	WP_000104443.1	GntP family transporter	-
I6K29_RS23705 (I6K29_23705)	ygbM	4954029..4954805 (-)	777	WP_204638927.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=471568 I6K29_RS23685 WP_000081550.1 4949444..4950436(+) (rpoS) [Escherichia coli strain FDAARGOS_1299]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=471568 I6K29_RS23685 WP_000081550.1 4949444..4950436(+) (rpoS) [Escherichia coli strain FDAARGOS_1299]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715