Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   H3V20_RS07235 Genome accession   NZ_CP059709
Coordinates   1356798..1357313 (+) Length   171 a.a.
NCBI ID   WP_057044125.1    Uniprot ID   -
Organism   Campylobacter jejuni strain C41     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1351798..1362313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3V20_RS07210 (H3V20_07210) - 1352258..1352596 (+) 339 WP_002852397.1 hypothetical protein -
  H3V20_RS07215 (H3V20_07215) cdsA 1352605..1353330 (+) 726 WP_002859635.1 phosphatidate cytidylyltransferase -
  H3V20_RS07220 (H3V20_07220) dxr 1353327..1354397 (+) 1071 WP_002859634.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  H3V20_RS07225 (H3V20_07225) - 1354399..1355793 (+) 1395 WP_057044127.1 M99 family carboxypeptidase catalytic domain-containing protein -
  H3V20_RS07230 (H3V20_07230) tsaD 1355790..1356797 (+) 1008 WP_057044126.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  H3V20_RS07235 (H3V20_07235) ctsG 1356798..1357313 (+) 516 WP_057044125.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H3V20_RS07240 (H3V20_07240) - 1357313..1357929 (+) 617 Protein_1412 DUF2920 family protein -
  H3V20_RS07245 (H3V20_07245) atpE 1358011..1358349 (+) 339 WP_002860554.1 F0F1 ATP synthase subunit C -
  H3V20_RS07255 (H3V20_07255) - 1358667..1359578 (+) 912 WP_032580942.1 AEC family transporter -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18677.53 Da        Isoelectric Point: 6.4682

>NTDB_id=471507 H3V20_RS07235 WP_057044125.1 1356798..1357313(+) (ctsG) [Campylobacter jejuni strain C41]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSNNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=471507 H3V20_RS07235 WP_057044125.1 1356798..1357313(+) (ctsG) [Campylobacter jejuni strain C41]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAATAATAAAGCTTGTGTGATCTTAAGCAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93