Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   H2513_RS04285 Genome accession   NZ_CP059704
Coordinates   943901..946294 (-) Length   797 a.a.
NCBI ID   WP_316730521.1    Uniprot ID   -
Organism   Pasteurella multocida strain RCAD0730     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 938901..951294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2513_RS04265 (H2513_04245) kdsB 940119..940895 (-) 777 WP_005754311.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H2513_RS04270 (H2513_04250) - 940897..941079 (-) 183 WP_005731619.1 Trm112 family protein -
  H2513_RS04275 (H2513_04255) lpxK 941091..942068 (-) 978 WP_064972783.1 tetraacyldisaccharide 4'-kinase -
  H2513_RS04280 (H2513_04260) msbA 942100..943848 (-) 1749 WP_005716843.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  H2513_RS04285 (H2513_04265) rec2 943901..946294 (-) 2394 WP_316730521.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  H2513_RS04290 (H2513_04270) dksA 946591..947028 (+) 438 WP_005716860.1 RNA polymerase-binding protein DksA -
  H2513_RS04295 (H2513_04275) pcnB 947117..948622 (+) 1506 WP_316730522.1 polynucleotide adenylyltransferase PcnB -
  H2513_RS04300 (H2513_04280) folK 948634..949131 (+) 498 WP_005716864.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  H2513_RS04305 (H2513_04285) - 949118..950200 (-) 1083 WP_316730523.1 homoserine O-acetyltransferase -
  H2513_RS04310 (H2513_04290) - 950363..951073 (+) 711 WP_005722678.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 90986.31 Da        Isoelectric Point: 9.8259

>NTDB_id=471467 H2513_RS04285 WP_316730521.1 943901..946294(-) (rec2) [Pasteurella multocida strain RCAD0730]
MKNALLSMSVVTVFSACSLLWLPEHFLLHWHITLLVFALLLVSIIICVLCGKNHWISPLIFVMSSVGILGYIHDQARQTL
LQADLVAQLPRKIETEFKIIEVLQQKNYQTFVVSAQLSPQQAKQKMILQWHAQEKAQIGEIWKGELRLRPISSRLNMGGF
DKQQWYFAKGITAYATVKSAVKISEQLSWREKWLREGVKQTMQLEYQGLLLALAFGERAWLPTDIWQTYQKTNTAHVIAI
SGLHIGLAMGIGYFFIRLIQFLLPLKWVTPTLPIIVGLLFAWFYAELAGFSIPTSRAFFALTVVSWVKLWRRSYSVWQFF
LLVVALLLLGEPCMILSSSFWLSVSAVSVLMLWYQIFPLSLLHWRGKKITESSWRNCRWFFSLLHLQLGLLWLFTPVQLL
LFQGIALTSFMANVLVVPIYSVILIPLILLAVITQGAFSSWSIANTVAKYVTMLLTPLQSHWVVFSQQEILCLIAILALT
FIILIWYLYDLKKESLKCYAKVPRFFHLNQMRLLNPSLKWKTYLLAVGISLYCFLQILYKAISQPLWRLDTLDVGQGLAN
LIVVNGKGVLYDTGASWAGGSMAELEIIPYLQREGIELEQVILSHDDNDHVGGAETILKHYPQAKLMTASAQNYGKTDRT
FCEAGKTWTWQHLTFKALSPTKIVKRAKNTDSCVLLISDGSHHLLLTGDADIAAEKQFVNQLSQLDVLQVGHHGSKTSTG
YELLYQTRPKIALISSGRWNPWQFPHVQVVQRLKRYQTAVYNTGELGQISLLFHAKHIEIQTARTDFSPWYRRLIGL

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=471467 H2513_RS04285 WP_316730521.1 943901..946294(-) (rec2) [Pasteurella multocida strain RCAD0730]
ATGAAAAACGCTCTTTTGTCAATGTCTGTCGTGACCGTATTCAGCGCCTGTTCGTTACTTTGGCTACCTGAACATTTCTT
GCTTCATTGGCACATAACATTGTTAGTCTTCGCATTATTGCTAGTCAGCATAATCATTTGTGTTCTTTGTGGCAAAAATC
ACTGGATTTCGCCTCTGATCTTTGTAATGAGTTCAGTGGGCATTTTAGGCTATATTCACGATCAAGCTCGTCAGACATTA
TTGCAAGCGGACTTGGTTGCTCAACTGCCTCGAAAGATAGAGACAGAATTTAAAATCATTGAAGTATTACAACAAAAAAA
CTATCAAACTTTTGTGGTTTCTGCACAATTGTCTCCGCAACAAGCAAAACAAAAAATGATTCTTCAATGGCACGCGCAAG
AAAAGGCACAGATAGGGGAGATTTGGAAAGGAGAACTACGGCTCAGACCGATTTCATCAAGGCTCAATATGGGCGGTTTT
GATAAACAGCAATGGTATTTTGCCAAAGGTATTACCGCTTATGCAACAGTAAAAAGTGCGGTCAAAATAAGTGAACAGTT
ATCTTGGCGAGAAAAATGGTTGCGAGAGGGAGTGAAACAGACCATGCAGCTGGAATATCAAGGACTGTTACTTGCGCTAG
CTTTTGGTGAACGGGCATGGTTACCCACAGACATTTGGCAAACTTATCAAAAAACTAACACAGCACATGTGATTGCGATA
TCGGGTTTACATATTGGGCTTGCGATGGGAATAGGTTATTTCTTTATTCGTTTAATTCAGTTCCTATTGCCATTAAAGTG
GGTGACACCGACCTTGCCAATCATTGTTGGGCTTCTTTTTGCATGGTTTTATGCTGAGTTGGCGGGCTTTAGTATTCCAA
CATCACGCGCGTTTTTTGCTTTAACTGTCGTGTCGTGGGTAAAACTTTGGCGGCGTTCTTATTCTGTTTGGCAATTTTTT
TTATTAGTTGTTGCTTTGTTATTGCTAGGTGAACCATGTATGATTTTATCGAGCAGTTTCTGGCTGTCGGTTAGTGCTGT
GAGTGTATTAATGCTTTGGTATCAAATTTTTCCGCTGTCTTTATTACATTGGCGAGGAAAAAAGATCACAGAGAGTTCTT
GGCGCAACTGTCGTTGGTTCTTTAGTCTTCTTCATTTACAACTTGGCTTATTGTGGCTTTTTACTCCCGTTCAATTATTG
CTTTTTCAGGGAATAGCTTTAACGAGCTTTATGGCGAATGTGCTTGTGGTGCCTATCTATAGTGTGATTTTAATACCATT
GATTTTATTGGCGGTGATCACTCAAGGGGCATTTTCCTCTTGGTCTATTGCAAATACTGTTGCGAAATACGTCACGATGC
TTTTAACTCCATTACAATCTCATTGGGTTGTATTCTCACAGCAGGAAATACTCTGCCTGATCGCGATCTTAGCTTTAACT
TTTATTATATTGATTTGGTATCTCTATGATTTAAAAAAAGAATCACTGAAGTGCTACGCTAAAGTACCACGTTTTTTTCA
TCTTAATCAAATGCGGCTGTTAAATCCGTCTTTAAAATGGAAAACTTATTTACTCGCTGTTGGCATCAGTCTTTACTGTT
TCTTACAGATACTTTATAAGGCGATATCTCAACCGCTTTGGCGTTTAGATACGCTCGATGTTGGACAAGGGTTAGCTAAC
TTGATTGTCGTGAATGGGAAAGGGGTTTTGTATGATACGGGGGCGTCTTGGGCGGGAGGAAGTATGGCGGAACTGGAAAT
TATACCCTATTTACAAAGAGAGGGGATTGAGTTAGAACAGGTGATTTTAAGCCATGATGATAATGATCATGTCGGGGGCG
CAGAAACAATTCTAAAACATTACCCTCAAGCGAAGCTGATGACGGCATCTGCTCAAAATTACGGAAAAACTGACCGCACT
TTTTGTGAAGCCGGTAAAACCTGGACTTGGCAACACTTAACATTCAAGGCCCTTTCACCGACTAAAATAGTGAAGCGAGC
GAAAAATACGGACTCTTGTGTGTTACTGATCTCAGATGGTTCTCATCATCTCCTCTTAACTGGTGATGCAGATATTGCTG
CGGAAAAGCAGTTTGTGAATCAGTTAAGTCAACTTGATGTGTTACAAGTTGGACATCATGGCAGTAAAACGTCAACAGGG
TATGAACTTCTTTATCAAACACGACCAAAAATCGCACTGATTTCAAGTGGTCGTTGGAATCCATGGCAATTTCCACATGT
TCAGGTTGTACAACGACTTAAACGTTATCAAACGGCTGTATATAACACTGGTGAGTTAGGACAAATTAGCTTACTTTTTC
ATGCTAAACACATCGAAATTCAAACCGCAAGAACGGATTTTTCGCCTTGGTATCGTAGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(30-180)

Competence protein (Competence)

(213-487)

Metallo-beta-lactamase superfamily (Lactamase_B)

(554-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.688

96.612

0.499