Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   H3N00_RS05430 Genome accession   NZ_CP059699
Coordinates   1162714..1164528 (+) Length   604 a.a.
NCBI ID   WP_063082905.1    Uniprot ID   A0A9Q8N9H1
Organism   Weissella cibaria strain CBA3636     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1157714..1169528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3N00_RS05405 (H3N00_05405) - 1157964..1158281 (+) 318 WP_182127676.1 PTS sugar transporter subunit IIB -
  H3N00_RS05410 (H3N00_05410) - 1158327..1158650 (+) 324 WP_010372502.1 PTS lactose/cellobiose transporter subunit IIA -
  H3N00_RS05415 (H3N00_05415) - 1158656..1160107 (+) 1452 WP_182127677.1 6-phospho-beta-glucosidase -
  H3N00_RS05420 (H3N00_05420) - 1160174..1161538 (+) 1365 WP_063082908.1 PTS sugar transporter subunit IIC -
  H3N00_RS05425 (H3N00_05425) - 1161640..1162674 (+) 1035 WP_141146532.1 competence protein CoiA family protein -
  H3N00_RS05430 (H3N00_05430) pepF 1162714..1164528 (+) 1815 WP_063082905.1 oligoendopeptidase F Regulator
  H3N00_RS05435 (H3N00_05435) - 1164618..1165337 (-) 720 WP_063082904.1 MIP/aquaporin family protein -
  H3N00_RS05440 (H3N00_05440) - 1165645..1166034 (+) 390 WP_010372520.1 DUF948 domain-containing protein -
  H3N00_RS05445 (H3N00_05445) - 1166050..1166622 (+) 573 WP_010372524.1 hypothetical protein -
  H3N00_RS05450 (H3N00_05450) ccpA 1166681..1167682 (-) 1002 WP_063082902.1 catabolite control protein A -
  H3N00_RS05455 (H3N00_05455) - 1167934..1169034 (+) 1101 WP_182127678.1 Xaa-Pro peptidase family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67662.53 Da        Isoelectric Point: 4.2890

>NTDB_id=471426 H3N00_RS05430 WP_063082905.1 1162714..1164528(+) (pepF) [Weissella cibaria strain CBA3636]
MAKELPLRDALPESMTWNLQTIFASDEAWEDAFEELADRLESADFFAQSATTSGTDLYNALQYGLGVMRDLEKLYVYASM
KSDQDTANAYYQGLSNRAEALAARVSAAIAFFDPAVLSLSEAELTAFFEAEPKLGAYKHYFESILTQQGHVLTPDQEALL
AAAGDVFGASERTFGVLDNADIKFEAVANEDGELETLSNGVYSRLLESTDPEVRRNAFQTFYKSYVSLENTFASLIASHV
KGHNFMAAVHNYDNAREAALAGNHVPEVVYDTLVAEVNEALPLLHRYVALRKQLLGLDELHSYDLYTPILGEPDFTIDYE
SAQAEALKALAPLGEDYLEVVNTAFDNRWIDVIENKGKRSGAYSGGSYDTNPFILLNWVDNLNNLSTLVHEMGHSVHSYL
TRQNQPYHYGDYPIFLAEIASTTNENLLTDYLLKTVTDKKLRAYILNQYLDGVKGTVFRQTQFAEFEQWLHVMDAQGVPL
TADVLDEAYGELNRRYYGPALTFDDEIAHEWERIPHFYYNFYVFQYSTGFAAATAMADKILTEGAPAVAAYKEYLKAGSS
AFPIDVMKKAGLDMTKPDYLRDTFKVFEGRLNEFEALVAELAAE

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=471426 H3N00_RS05430 WP_063082905.1 1162714..1164528(+) (pepF) [Weissella cibaria strain CBA3636]
ATGGCCAAAGAATTACCATTACGAGATGCATTGCCCGAGTCAATGACTTGGAATTTGCAGACGATTTTTGCTTCTGATGA
AGCGTGGGAAGATGCCTTTGAAGAATTGGCCGATCGGTTAGAGTCAGCGGACTTCTTCGCCCAATCAGCAACGACGTCAG
GTACAGATTTGTACAATGCGTTGCAATACGGCTTGGGTGTGATGCGTGACTTAGAAAAGCTGTATGTCTATGCTTCAATG
AAGTCAGACCAAGATACAGCCAACGCTTATTATCAAGGGTTGAGCAATCGAGCTGAAGCCTTGGCGGCACGTGTTTCTGC
GGCCATTGCATTCTTTGATCCAGCTGTTTTGTCACTTTCAGAAGCTGAATTAACGGCCTTTTTTGAAGCAGAACCTAAGC
TGGGTGCGTACAAGCATTACTTCGAGAGCATCCTGACGCAACAAGGTCACGTCTTAACGCCAGACCAAGAAGCATTGTTA
GCTGCTGCCGGGGATGTTTTTGGGGCTTCAGAACGGACGTTTGGTGTGTTGGATAATGCCGATATTAAGTTTGAAGCTGT
TGCCAACGAAGATGGTGAACTGGAGACGTTGTCAAACGGTGTCTATTCACGTTTGTTGGAGTCGACTGACCCGGAAGTAC
GTCGAAATGCTTTCCAAACGTTCTACAAGTCATATGTCTCACTTGAAAATACCTTTGCATCTTTGATCGCAAGTCACGTG
AAGGGTCATAACTTTATGGCGGCGGTTCACAACTATGATAATGCGCGTGAAGCTGCTTTAGCTGGTAACCATGTGCCAGA
AGTGGTGTACGATACATTGGTTGCGGAAGTAAACGAGGCGTTGCCATTGTTGCATCGTTACGTTGCCCTCCGAAAGCAAT
TGTTGGGCTTGGACGAATTGCACTCATACGATTTGTATACCCCAATTTTGGGTGAACCTGACTTTACGATTGATTACGAA
TCTGCTCAGGCTGAGGCATTAAAGGCGTTGGCGCCATTGGGGGAAGATTATCTGGAAGTTGTCAATACAGCCTTTGATAA
TCGTTGGATTGATGTCATTGAGAATAAGGGCAAGCGTTCAGGAGCTTACTCGGGTGGTTCATACGATACAAATCCATTCA
TTTTGCTGAACTGGGTCGATAACTTGAACAATTTGAGCACTTTAGTTCACGAAATGGGCCACTCAGTGCACTCGTATTTG
ACTCGTCAAAATCAACCATACCACTACGGCGATTACCCAATCTTCTTGGCTGAAATTGCGTCAACGACGAACGAAAACTT
GTTGACGGATTACTTGCTTAAGACGGTGACGGATAAGAAGTTGCGTGCGTATATCTTGAATCAGTACTTGGATGGTGTGA
AGGGAACAGTCTTCCGTCAAACCCAATTTGCAGAGTTTGAGCAATGGTTGCACGTTATGGATGCGCAAGGCGTGCCATTG
ACAGCTGATGTTTTGGATGAGGCCTATGGTGAGCTTAACCGACGTTACTACGGCCCAGCCTTGACGTTTGATGATGAAAT
TGCGCACGAGTGGGAGCGTATTCCACACTTCTATTACAACTTCTACGTGTTCCAATACAGTACTGGTTTTGCTGCTGCAA
CGGCAATGGCGGACAAGATTTTGACTGAAGGGGCACCGGCTGTGGCGGCTTACAAAGAATACTTGAAGGCTGGATCATCT
GCATTCCCAATTGATGTGATGAAGAAGGCTGGGCTTGATATGACTAAGCCAGATTACTTGCGTGACACATTCAAAGTGTT
CGAAGGACGCTTGAACGAATTTGAAGCGTTGGTGGCAGAATTAGCTGCTGAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-584)

Oligopeptidase F (Peptidase_M3_N)

(117-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.469

97.848

0.523