Detailed information NTG0471404

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6K10_RS01485
• Genome accession: NZ_CP069973
• Coordinates: 96047..97039 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1280
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 91047..102039

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6K10_RS01460 (I6K10_01460)	ygbN	91702..93066 (+)	1365	WP_000104455.1	GntP family transporter	-
I6K10_RS01465 (I6K10_01465)	-	93105..93341 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
I6K10_RS01470 (I6K10_01470)	-	93352..94779 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
I6K10_RS01475 (I6K10_01475)	-	94779..95372 (-)	594	WP_001521150.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
I6K10_RS01480 (I6K10_01480)	-	95519..95926 (+)	408	WP_001521151.1	MarR family transcriptional regulator	-
I6K10_RS01485 (I6K10_01485)	rpoS	96047..97039 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6K10_RS01490 (I6K10_01490)	nlpD	97102..98196 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
I6K10_RS01495 (I6K10_01495)	pcm	98381..99007 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I6K10_RS01500 (I6K10_01500)	surE	99001..99762 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6K10_RS01505 (I6K10_01505)	truD	99743..100792 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
I6K10_RS01510 (I6K10_01510)	ispF	100789..101268 (-)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6K10_RS01515 (I6K10_01515)	ispD	101268..101978 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=471404 I6K10_RS01485 WP_000081550.1 96047..97039(-) (rpoS) [Escherichia coli strain FDAARGOS_1280]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=471404 I6K10_RS01485 WP_000081550.1 96047..97039(-) (rpoS) [Escherichia coli strain FDAARGOS_1280]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715