Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   H3M14_RS02765 Genome accession   NZ_CP059697
Coordinates   564589..565278 (-) Length   229 a.a.
NCBI ID   WP_112260951.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain CBA3635     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 559589..570278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3M14_RS02755 (H3M14_02755) rpoC 560194..563838 (+) 3645 WP_112260955.1 DNA-directed RNA polymerase subunit beta' -
  H3M14_RS02760 (H3M14_02760) - 564013..564585 (+) 573 WP_112260953.1 isochorismatase family protein -
  H3M14_RS02765 (H3M14_02765) comC 564589..565278 (-) 690 WP_112260951.1 A24 family peptidase Machinery gene
  H3M14_RS02770 (H3M14_02770) rpsL 565559..565972 (+) 414 WP_004270179.1 30S ribosomal protein S12 -
  H3M14_RS02775 (H3M14_02775) rpsG 566062..566532 (+) 471 WP_004270185.1 30S ribosomal protein S7 -
  H3M14_RS02780 (H3M14_02780) fusA 566628..568715 (+) 2088 WP_016265721.1 elongation factor G -
  H3M14_RS02785 (H3M14_02785) - 569285..569836 (-) 552 WP_112260950.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26091.41 Da        Isoelectric Point: 7.3860

>NTDB_id=471388 H3M14_RS02765 WP_112260951.1 564589..565278(-) (comC) [Latilactobacillus sakei strain CBA3635]
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWYDLLPLFSYLYLRGHCRTCHAQIKPTFLFSELA
GGLLTCFIFSQSLSWDLAYLLVILFYISLVDLFYYVLYPIPLFASLAPLFYLYWPQNHWLGAIVFCCGLLLTTYWAAGFG
FGDVELLTILTLWVGLEPVLRILLAACLICILFQGIKKIWPSPKQATCQIPFIPYISIGVVILLLQTPQ

Nucleotide


Download         Length: 690 bp        

>NTDB_id=471388 H3M14_RS02765 WP_112260951.1 564589..565278(-) (comC) [Latilactobacillus sakei strain CBA3635]
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACAGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGTACGACTTATTACCCCTAT
TCAGCTACTTATACTTGCGTGGCCACTGCCGCACCTGTCACGCCCAGATTAAGCCTACTTTTTTATTCAGCGAACTAGCT
GGTGGTCTATTAACCTGCTTCATTTTTAGCCAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTCTTTTATAT
CAGTCTCGTTGACCTCTTTTACTACGTTCTCTACCCGATTCCCTTATTCGCATCACTGGCGCCCCTCTTTTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCATCGTCTTTTGCTGCGGGCTGTTGCTCACCACTTACTGGGCAGCTGGTTTTGGT
TTTGGCGATGTCGAGTTACTCACTATCCTAACATTGTGGGTCGGCCTCGAACCCGTTTTGCGAATTCTCTTGGCAGCCTG
TCTGATCTGCATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGTGCCAGATTCCGTTTATTC
CCTATATATCGATAGGGGTGGTAATACTGCTCCTACAAACACCGCAATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(11-90)

Type IV leader peptidase family (Peptidase_A24)

(99-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Latilactobacillus sakei subsp. sakei 23K

94.76

100

0.948