Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GNZ07_RS05570 Genome accession   NZ_CP059677
Coordinates   1205189..1206142 (+) Length   317 a.a.
NCBI ID   WP_003356131.1    Uniprot ID   -
Organism   Clostridium botulinum strain CJ0611A1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1200189..1211142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNZ07_RS05545 (GNZ07_05545) - 1200310..1200546 (+) 237 WP_003356614.1 SHOCT domain-containing protein -
  GNZ07_RS05550 (GNZ07_05550) - 1200816..1201517 (+) 702 WP_003356293.1 response regulator transcription factor -
  GNZ07_RS05555 (GNZ07_05555) - 1201517..1202923 (+) 1407 WP_003356723.1 HAMP domain-containing sensor histidine kinase -
  GNZ07_RS05560 (GNZ07_05560) - 1203263..1203949 (-) 687 WP_003357175.1 DNA alkylation repair protein -
  GNZ07_RS05565 (GNZ07_05565) - 1204185..1204943 (-) 759 WP_003388491.1 AraC family transcriptional regulator -
  GNZ07_RS05570 (GNZ07_05570) ceuB 1205189..1206142 (+) 954 WP_003356131.1 ABC transporter permease Machinery gene
  GNZ07_RS05575 (GNZ07_05575) - 1206132..1207082 (+) 951 WP_003357016.1 iron chelate uptake ABC transporter family permease subunit -
  GNZ07_RS05580 (GNZ07_05580) - 1207079..1207834 (+) 756 WP_003356703.1 ATP-binding cassette domain-containing protein -
  GNZ07_RS05585 (GNZ07_05585) - 1207908..1208852 (+) 945 WP_003356118.1 siderophore ABC transporter substrate-binding protein -
  GNZ07_RS05590 (GNZ07_05590) - 1209054..1210055 (+) 1002 WP_003356588.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34888.28 Da        Isoelectric Point: 10.0382

>NTDB_id=471270 GNZ07_RS05570 WP_003356131.1 1205189..1206142(+) (ceuB) [Clostridium botulinum strain CJ0611A1]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIVVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATITEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYNLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSMVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=471270 GNZ07_RS05570 WP_003356131.1 1205189..1206142(+) (ceuB) [Clostridium botulinum strain CJ0611A1]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATTAGTAGAATCCCAAGACTTATAAGTATTATTG
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGAAATAAATTTGTATCTCCAGATACGGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTATTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTCGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATATAATCTTATT
CAAAGTATTGCCTCTTGGCTTCAAGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAATAAATTTACAGTAGCAGGTATGGGAGAGGATTTTTCCAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGAAAA
ATACCATTCCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGTTGTGACATATTAGGTAGGTTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGAGTTATAGGAAGTATGGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.447

98.107

0.505