Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ABD1_RS12230 Genome accession   NC_020547
Coordinates   2582607..2583548 (-) Length   313 a.a.
NCBI ID   WP_001210792.1    Uniprot ID   A0A077GHT6
Organism   Acinetobacter baumannii D1279779     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2577607..2588548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD1_RS12215 (ABD1_23800) bauB 2579918..2580886 (-) 969 WP_001104132.1 siderophore-binding periplasmic lipoprotein BauB -
  ABD1_RS12220 (ABD1_23810) bauE 2580893..2581663 (-) 771 WP_000582124.1 ferric acinetobactin ABC transporter ATP-binding protein BauE -
  ABD1_RS12225 (ABD1_23820) bauC 2581660..2582607 (-) 948 WP_001223281.1 ferric acinetobactin ABC transporter permease subunit BauC -
  ABD1_RS12230 (ABD1_23830) ceuB 2582607..2583548 (-) 942 WP_001210792.1 ferric acinetobactin ABC transporter permease subunit BauD Machinery gene
  ABD1_RS12235 (ABD1_23840) basB 2584180..2586207 (+) 2028 WP_000939848.1 acinetobactin non-ribosomal peptide synthetase subunit BasB -
  ABD1_RS12240 (ABD1_23850) basA 2586278..2588125 (-) 1848 WP_000910262.1 acinetobactin non-ribosomal peptide synthetase subunit BasA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33993.06 Da        Isoelectric Point: 8.6941

>NTDB_id=47122 ABD1_RS12230 WP_001210792.1 2582607..2583548(-) (ceuB) [Acinetobacter baumannii D1279779]
MRFGLFCIFIILCICSLLLGAEQIQWSTLFSFSHESWLTLTASRIPRLITIVLTGIGLAVCGVILQHIVRNKFVEPETSG
GLDAAKLGILVSLTLVPVTSTLSKMIFAIIFCFIASLIYIAIIRRIRFRNTVLVPVIGLMYGSVLSALAEFYAYRFNILQ
SMQGWLLGDFSKIVQGHYEVIYIIFPIVVLTYLFAHRFTVIGMGEEMASSLGLSYAAIAAIGLILVAITVSTTVITVGAI
PFVGLVVPNLVALKYGENLAKTLPIVALGGASLLLVCDILGRSIIYPFEVPIGLTAGGVGGIIFLILILREFR

Nucleotide


Download         Length: 942 bp        

>NTDB_id=47122 ABD1_RS12230 WP_001210792.1 2582607..2583548(-) (ceuB) [Acinetobacter baumannii D1279779]
ATGCGATTTGGCTTATTCTGTATTTTTATCATTTTATGTATTTGTTCGTTATTGCTTGGGGCTGAGCAAATACAGTGGTC
TACCTTATTTTCTTTTTCTCATGAGAGTTGGCTCACTCTTACAGCCAGCCGTATTCCTCGTTTAATTACCATTGTGCTTA
CCGGTATCGGGTTGGCGGTATGTGGCGTCATCTTGCAGCATATTGTGCGTAACAAGTTTGTTGAACCGGAAACATCGGGT
GGTTTAGATGCTGCCAAACTGGGAATTTTAGTGTCATTAACTTTAGTTCCGGTAACCAGCACGCTGAGCAAGATGATATT
TGCGATCATTTTTTGTTTTATTGCTAGCTTAATTTATATCGCAATTATTCGCCGGATCCGTTTTAGAAATACGGTTTTAG
TACCGGTTATTGGCTTGATGTACGGCAGTGTACTGAGTGCCTTAGCTGAGTTTTATGCCTATCGCTTTAATATTTTACAA
AGTATGCAAGGGTGGCTTTTAGGAGATTTTTCAAAAATTGTCCAAGGCCACTATGAAGTTATTTACATTATTTTTCCGAT
TGTTGTCCTGACTTATCTTTTCGCACACCGCTTTACCGTGATTGGTATGGGTGAAGAGATGGCTTCTAGCTTAGGTCTCA
GTTATGCAGCTATAGCCGCGATTGGTTTGATACTGGTTGCTATTACAGTTTCGACCACAGTAATTACGGTTGGTGCTATT
CCTTTTGTGGGGCTCGTGGTCCCCAATTTAGTCGCACTGAAATACGGAGAAAACTTAGCTAAAACCTTGCCCATTGTGGC
TTTGGGTGGGGCATCTCTATTACTGGTTTGCGACATTCTTGGCCGCTCAATCATTTACCCATTTGAAGTGCCAATTGGAC
TTACCGCAGGTGGTGTGGGGGGAATTATTTTCCTCATCCTCATTTTGAGGGAGTTCAGATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A077GHT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

44.595

94.569

0.422

Multiple sequence alignment