Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   CMOL_RS05530 Genome accession   NZ_CP059597
Coordinates   1088004..1089182 (-) Length   392 a.a.
NCBI ID   WP_239820045.1    Uniprot ID   -
Organism   Campylobacter sp. RM10537     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1083004..1094182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMOL_RS05505 (CMOL_1092) fliL 1084156..1084692 (+) 537 WP_200280805.1 flagellar basal body-associated protein FliL -
  CMOL_RS05510 (CMOL_1093) acpS 1084692..1085039 (+) 348 WP_239820042.1 holo-ACP synthase -
  CMOL_RS05515 (CMOL_1094) - 1085036..1085452 (-) 417 WP_200280810.1 hypothetical protein -
  CMOL_RS05520 (CMOL_1095) - 1085433..1086815 (-) 1383 WP_239820043.1 cytochrome P450 -
  CMOL_RS05525 (CMOL_1096) - 1086812..1087933 (-) 1122 WP_239820044.1 DUF829 domain-containing protein -
  CMOL_RS05530 (CMOL_1097) kpsS 1088004..1089182 (-) 1179 WP_239820045.1 capsule biosynthesis protein Regulator
  CMOL_RS05535 (CMOL_1098) - 1089161..1091248 (-) 2088 WP_239820046.1 capsular polysaccharide biosynthesis protein -
  CMOL_RS05540 (CMOL_1099) - 1091329..1092090 (-) 762 WP_200280849.1 phosphocholine cytidylyltransferase family protein -
  CMOL_RS05545 (CMOL_1100) - 1092087..1092695 (-) 609 WP_239820047.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 47034.00 Da        Isoelectric Point: 10.1531

>NTDB_id=471196 CMOL_RS05530 WP_239820045.1 1088004..1089182(-) (kpsS) [Campylobacter sp. RM10537]
MEFDQKIKKEFSGKNVILLQGPVGNFFYRLAKKLKKYNAKILKINFNGGDFLFYPSGKIYKGKEEDLTQFYEKIFKQYKV
QAILMYNDCRLIHKKAIDLAKKLNIDVWIFEEGYLRPYCITFEKNGVNANSLLPRNKNFYLNQKICSKKSIKEIPGGFKY
MAFYAFLYWLFSFLLAPFFNNNLHHRTLYPFEFLFWFRSLYRKYFYKFTEKKLNDKIYNLKKKYFLAILQVYNDTQVKYH
YKKSIEEFIEETILSFANHARAKSYLVFKHHPMDRGYKNYFKFIQMVSEKYHVEGRVLYVHDTHLPRLLKNALGCITINS
TVGLSAILDSCPTKVCGKAFYDFEGLTYPKKLHFFWREAHAYRPNPVLVSQYKNYLLKTNQFNVNFYKNSLK

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=471196 CMOL_RS05530 WP_239820045.1 1088004..1089182(-) (kpsS) [Campylobacter sp. RM10537]
ATGGAATTTGATCAAAAAATAAAAAAAGAATTTAGCGGAAAAAATGTTATTCTTTTGCAAGGACCAGTAGGTAATTTTTT
TTATCGCTTAGCAAAAAAACTTAAAAAATATAATGCTAAAATTCTAAAAATTAATTTTAATGGCGGGGACTTTTTATTTT
ATCCTAGTGGAAAAATTTATAAGGGCAAAGAAGAGGATTTAACGCAGTTTTATGAAAAAATTTTTAAGCAATATAAAGTC
CAAGCTATTTTAATGTATAATGATTGTCGATTGATCCATAAAAAGGCTATAGATCTTGCTAAAAAATTAAATATCGATGT
TTGGATTTTTGAAGAAGGATATTTAAGACCTTATTGCATTACTTTTGAAAAAAATGGTGTTAATGCAAATTCCTTATTAC
CTCGTAATAAAAATTTTTATCTTAATCAAAAAATATGCAGTAAAAAATCTATCAAAGAAATTCCTGGTGGATTTAAATAT
ATGGCCTTTTATGCTTTTTTATATTGGCTATTCTCGTTTCTTTTGGCTCCATTTTTTAACAATAATCTTCATCATCGCAC
CTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATATTTTTATAAATTTACAGAAAAAAAACTAA
ACGATAAGATTTACAATCTTAAAAAGAAATATTTTTTAGCTATTTTGCAAGTTTATAATGACACTCAAGTGAAATATCAT
TATAAAAAAAGTATAGAAGAATTTATAGAAGAAACTATACTTTCTTTTGCAAATCATGCTAGAGCTAAGTCTTACTTGGT
TTTTAAACATCATCCTATGGATAGAGGATATAAAAATTATTTTAAATTTATTCAAATGGTTAGTGAGAAATATCACGTTG
AAGGAAGAGTTTTATATGTCCATGATACTCATTTGCCAAGACTTTTAAAAAATGCCTTAGGATGTATTACTATAAATTCT
ACTGTTGGCCTAAGTGCTATTTTAGATAGTTGTCCTACTAAAGTTTGCGGTAAGGCTTTTTATGATTTTGAAGGTTTAAC
CTATCCTAAGAAGCTTCATTTTTTTTGGAGAGAAGCTCACGCTTATAGACCAAATCCAGTTTTGGTATCTCAATATAAAA
ACTATCTTTTAAAAACCAATCAATTTAATGTAAATTTTTATAAAAATTCATTAAAGTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.92

99.235

0.783