Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   CMOL_RS02170 Genome accession   NZ_CP059597
Coordinates   425394..425831 (+) Length   145 a.a.
NCBI ID   WP_239820537.1    Uniprot ID   -
Organism   Campylobacter sp. RM10537     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 420394..430831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMOL_RS02150 (CMOL_0428) - 420874..422805 (+) 1932 WP_239820535.1 DUF4118 domain-containing protein -
  CMOL_RS02155 (CMOL_0429) uvrB 422800..424773 (-) 1974 WP_239820536.1 excinuclease ABC subunit UvrB -
  CMOL_RS02160 (CMOL_0430) - 424932..425162 (+) 231 WP_137624181.1 hypothetical protein -
  CMOL_RS02165 (CMOL_0431) - 425152..425397 (+) 246 WP_137622217.1 hypothetical protein -
  CMOL_RS02170 (CMOL_0432) Cj0683 425394..425831 (+) 438 WP_239820537.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CMOL_RS02175 (CMOL_0433) - 425828..427666 (+) 1839 WP_239820538.1 primosomal protein N' -
  CMOL_RS02180 (CMOL_0434) - 427680..429053 (-) 1374 WP_239820539.1 DUF2972 domain-containing protein -
  CMOL_RS02185 (CMOL_0435) - 429057..429581 (-) 525 WP_239820540.1 adenylyl-sulfate kinase -
  CMOL_RS02190 (CMOL_0436) ispG 429692..430762 (+) 1071 WP_200282239.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16877.73 Da        Isoelectric Point: 6.9240

>NTDB_id=471188 CMOL_RS02170 WP_239820537.1 425394..425831(+) (Cj0683) [Campylobacter sp. RM10537]
MKKAFTLLELVFVVLILGILIGISLNFSGKNKDEAKILKLKIDYEMLSSALSLMRTQAELKEIAFMANLDQAKFNTPREK
LFYCVDQNGYSLLDSPIYSDFNSWMKITINQYRFFLNSKEYIDFIYHPNDGILECINSKYCKDLQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=471188 CMOL_RS02170 WP_239820537.1 425394..425831(+) (Cj0683) [Campylobacter sp. RM10537]
ATGAAAAAAGCTTTTACTTTGCTTGAATTAGTTTTTGTTGTTTTGATTTTAGGAATACTTATAGGTATATCTTTAAATTT
TTCAGGTAAAAACAAAGATGAAGCAAAAATTTTAAAATTAAAAATAGATTATGAAATGTTAAGCTCAGCTTTGTCACTCA
TGCGTACTCAAGCTGAGCTTAAGGAAATTGCTTTTATGGCAAATCTTGATCAAGCTAAATTTAACACCCCAAGAGAAAAA
CTTTTTTATTGTGTCGATCAAAATGGCTACTCTTTGCTTGATTCTCCCATTTATTCTGATTTTAATTCTTGGATGAAAAT
CACAATTAATCAATATAGATTTTTTTTAAATTCAAAAGAATATATCGATTTTATTTATCATCCTAATGATGGTATTTTAG
AGTGCATAAATTCAAAATATTGTAAAGATTTGCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.194

99.31

0.628