Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABD1_RS08020 Genome accession   NC_020547
Coordinates   1672935..1673570 (+) Length   211 a.a.
NCBI ID   WP_000264043.1    Uniprot ID   -
Organism   Acinetobacter baumannii D1279779     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1667935..1678570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD1_RS07995 (ABD1_15570) - 1668774..1669787 (+) 1014 WP_001096101.1 aminoglycoside phosphotransferase family protein -
  ABD1_RS08000 (ABD1_15580) murU 1669787..1670476 (+) 690 WP_000646453.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  ABD1_RS08005 (ABD1_15590) rsmG 1670564..1671196 (+) 633 WP_000553192.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ABD1_RS08010 (ABD1_15600) - 1671219..1672001 (+) 783 WP_000057212.1 ParA family protein -
  ABD1_RS08015 (ABD1_15610) - 1671998..1672885 (+) 888 WP_000023432.1 ParB/RepB/Spo0J family partition protein -
  ABD1_RS08020 (ABD1_15620) exbB 1672935..1673570 (+) 636 WP_000264043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABD1_RS08025 (ABD1_15630) - 1673586..1674014 (+) 429 WP_000669684.1 ExbD/TolR family protein -
  ABD1_RS08030 (ABD1_15640) msbA 1674011..1675738 (+) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  ABD1_RS08035 (ABD1_15650) lpxK 1675741..1676751 (+) 1011 WP_000050455.1 tetraacyldisaccharide 4'-kinase -
  ABD1_RS08040 (ABD1_15660) kdsB 1676761..1677522 (+) 762 WP_000680700.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABD1_RS08045 (ABD1_15670) - 1677534..1678514 (+) 981 WP_043960937.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23241.12 Da        Isoelectric Point: 6.4861

>NTDB_id=47111 ABD1_RS08020 WP_000264043.1 1672935..1673570(+) (exbB) [Acinetobacter baumannii D1279779]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSTDISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=47111 ABD1_RS08020 WP_000264043.1 1672935..1673570(+) (exbB) [Acinetobacter baumannii D1279779]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTACAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393

Multiple sequence alignment