Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6K16_RS02845 Genome accession   NZ_CP069893
Coordinates   546812..548239 (+) Length   475 a.a.
NCBI ID   WP_171931555.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1286     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 541812..553239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K16_RS02805 (I6K16_02805) yeeW 541997..542191 (+) 195 WP_000988600.1 DUF5983 family protein -
  I6K16_RS02810 (I6K16_02810) - 542237..542317 (+) 81 Protein_553 hypothetical protein -
  I6K16_RS25600 (I6K16_02815) - 542606..542779 (-) 174 WP_032082634.1 transposase domain-containing protein -
  I6K16_RS02820 (I6K16_02820) - 542802..542987 (+) 186 Protein_555 EutP/PduV family microcompartment system protein -
  I6K16_RS02825 (I6K16_02825) tmaR 543088..543417 (-) 330 WP_000450409.1 DUF496 family protein -
  I6K16_RS02830 (I6K16_02830) yeeA 543589..544647 (-) 1059 WP_001200888.1 FUSC family protein -
  I6K16_RS02835 (I6K16_02835) sbmC 544845..545318 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  I6K16_RS02840 (I6K16_02840) dacD 545437..546603 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6K16_RS02845 (I6K16_02845) sbcB 546812..548239 (+) 1428 WP_171931555.1 exodeoxyribonuclease I Machinery gene
  I6K16_RS02850 (I6K16_02850) tsuB 548282..548509 (-) 228 WP_000985277.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  I6K16_RS02855 (I6K16_02855) tsuA 548523..549581 (-) 1059 WP_089676582.1 thiosulfate utilization transporter TsuA/YeeE -
  I6K16_RS02860 (I6K16_02860) plaP 549760..551118 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I6K16_RS02865 (I6K16_02865) yoeI 551108..551170 (-) 63 WP_010723108.1 membrane protein YoeI -
  I6K16_RS02870 (I6K16_02870) yeeY 551385..552314 (-) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  I6K16_RS02875 (I6K16_02875) yeeZ 552360..553184 (-) 825 WP_171931534.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54502.85 Da        Isoelectric Point: 5.4739

>NTDB_id=471067 I6K16_RS02845 WP_171931555.1 546812..548239(+) (sbcB) [Escherichia coli strain FDAARGOS_1286]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTCWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=471067 I6K16_RS02845 WP_171931555.1 546812..548239(+) (sbcB) [Escherichia coli strain FDAARGOS_1286]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCTGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCAGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577