Detailed information    

insolico Bioinformatically predicted

Overview


Name   uvrA   Type   Machinery gene
Locus tag   I6K87_RS08910 Genome accession   NZ_CP069892
Coordinates   1796106..1798931 (+) Length   941 a.a.
NCBI ID   WP_204982571.1    Uniprot ID   -
Organism   Streptococcus anginosus strain FDAARGOS_1357     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1791106..1803931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K87_RS08880 (I6K87_08880) - 1791784..1792827 (-) 1044 WP_204982569.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  I6K87_RS08885 (I6K87_08885) rpsF 1793095..1793385 (+) 291 WP_003026325.1 30S ribosomal protein S6 -
  I6K87_RS08890 (I6K87_08890) ssb 1793397..1793888 (+) 492 WP_003039831.1 single-stranded DNA-binding protein Machinery gene
  I6K87_RS08895 (I6K87_08895) rpsR 1793925..1794164 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  I6K87_RS08900 (I6K87_08900) - 1794346..1795023 (-) 678 WP_204982570.1 DUF1129 domain-containing protein -
  I6K87_RS08905 (I6K87_08905) - 1795039..1795983 (-) 945 WP_003030529.1 magnesium transporter CorA family protein -
  I6K87_RS08910 (I6K87_08910) uvrA 1796106..1798931 (+) 2826 WP_204982571.1 excinuclease ABC subunit UvrA Machinery gene
  I6K87_RS08915 (I6K87_08915) - 1798969..1799724 (-) 756 WP_049513876.1 hypothetical protein -
  I6K87_RS08920 (I6K87_08920) - 1799872..1800933 (+) 1062 WP_204982572.1 M24 family metallopeptidase -
  I6K87_RS08925 (I6K87_08925) efp 1800992..1801552 (+) 561 WP_003026309.1 elongation factor P -
  I6K87_RS08930 (I6K87_08930) - 1801663..1802052 (+) 390 WP_006269324.1 Asp23/Gls24 family envelope stress response protein -
  I6K87_RS08935 (I6K87_08935) nusB 1802045..1802470 (+) 426 WP_003039673.1 transcription antitermination factor NusB -
  I6K87_RS08940 (I6K87_08940) comR/comR2 1802687..1803160 (+) 474 WP_059221510.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence


Protein


Download         Length: 941 a.a.        Molecular weight: 104045.36 Da        Isoelectric Point: 6.5129

>NTDB_id=471046 I6K87_RS08910 WP_204982571.1 1796106..1798931(+) (uvrA) [Streptococcus anginosus strain FDAARGOS_1357]
MQDKIIIHGARAHNLKNIDVTIPRDKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGNMEKPDVDSIDGL
SPAISIDQKTTSKNPRSTVGTATEINDYLRLLYARVGTPYCINGHGAITASSVEQIVNQVLELPERQRLQILAPIVRKKK
GQHKTIFEKIQKDGYVRVRADGDIYDVTEVPELSKTKKHDIEVVVDRIVIKDGVRSRLFDSIEAALRIADGYVVIDTMDG
KELLFSEHYACPVCGFTVPELEPRLFSFNAPFGSCPDCDGLGVKLEVDLDMVVPDSSKTLREGALAPWNPISSNYYPQML
EQAMTEFGIDMDKPFEELTEDERQLIFFGSEGREFHFHYENEFGGVRDIDIPFEGVVTNINRRYHETNSDFTRTQMRLYM
NELTCASCHGYRLNPQALSVKVGGEGGLNIGQVSDLSIADHLELLSHLTLTENEVAIATPIIKEIRDRLTFLHNVGLNYL
TLSRSAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNNRLIASLKKMRDLGNTLIVVEHDEDTMREADWLI
DVGPGAGVFGGEIVAAGTPDQVAKNKKSITGQYLSGKRKIEVPLERRVGNGRFIEITGAREHNLQNITARFPLGKFIAVT
GVSGSGKSTLVNSILKRAIAQKLNRNSDKPGKFKNISGIEHIDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAKTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGTRYNSETLEVHYKEKNIAQVLDMTVNDAVEFF
KHIPKIERKLQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSFYILDEPTTGLHTEDIAKLLQVLSRFVD
DGNTVLVIEHNLDVIKTADYIIDLGPEGGIGGGTIIATGTPEEVAANSASYTGQYLKGKLK

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=471046 I6K87_RS08910 WP_204982571.1 1796106..1798931(+) (uvrA) [Streptococcus anginosus strain FDAARGOS_1357]
ATGCAGGATAAAATTATCATTCATGGAGCGCGAGCTCATAATCTAAAAAATATTGATGTCACGATTCCGCGAGACAAGCT
GGTTGTCGTGACTGGTTTGTCTGGTTCAGGCAAGTCTAGTCTCGCTTTTGACACTCTCTATGCAGAGGGGCAACGTCGCT
ATGTAGAAAGTTTGTCTGCCTATGCCCGCCAATTTTTGGGCAATATGGAAAAACCAGATGTGGATTCAATTGACGGACTT
AGTCCAGCTATTTCTATTGACCAAAAAACGACCAGCAAGAATCCGCGGTCAACGGTTGGAACAGCAACAGAAATCAACGA
TTACCTTCGTTTGCTCTATGCACGTGTGGGTACTCCTTACTGTATCAATGGGCATGGAGCTATTACTGCTTCTTCTGTGG
AACAAATCGTCAATCAAGTTTTGGAATTGCCAGAGCGTCAGCGGTTGCAAATCCTAGCGCCCATTGTTCGCAAGAAAAAA
GGGCAACACAAGACAATTTTTGAGAAAATTCAAAAAGACGGATACGTGCGTGTGCGCGCGGACGGAGATATTTATGATGT
CACAGAAGTTCCAGAGCTTTCTAAAACGAAAAAACACGATATCGAAGTAGTGGTGGACCGAATTGTTATTAAGGACGGTG
TACGCAGTCGGTTGTTTGATTCGATTGAAGCAGCCTTAAGAATTGCGGACGGTTACGTAGTGATTGATACGATGGATGGC
AAGGAATTACTCTTTTCCGAGCATTATGCTTGTCCAGTCTGTGGCTTTACGGTACCTGAGTTGGAGCCTCGCCTCTTTTC
TTTTAATGCCCCATTCGGCTCTTGTCCTGATTGTGACGGTCTGGGTGTGAAGTTGGAAGTGGACTTGGATATGGTGGTTC
CTGACAGTAGTAAAACCTTGCGGGAAGGCGCCTTAGCTCCGTGGAATCCTATTTCTTCAAATTACTATCCTCAAATGCTA
GAGCAGGCAATGACGGAATTTGGTATTGATATGGATAAGCCATTTGAGGAACTGACAGAAGACGAGCGGCAGCTGATTTT
CTTTGGCTCTGAAGGGCGAGAATTTCATTTCCATTATGAAAATGAATTTGGTGGTGTGCGAGATATTGACATTCCTTTTG
AAGGCGTCGTGACCAATATCAACCGTCGCTACCATGAGACCAATAGTGATTTCACCCGTACCCAGATGCGGCTTTATATG
AATGAGCTGACGTGTGCAAGCTGCCATGGTTATCGACTGAATCCACAAGCCTTGTCTGTTAAAGTGGGGGGTGAAGGTGG
TCTTAATATTGGCCAAGTATCTGATTTGTCTATTGCAGATCATTTAGAATTACTTTCTCATCTGACTTTGACTGAAAATG
AAGTGGCCATTGCAACACCGATTATCAAAGAAATCCGCGATCGCTTGACTTTTCTTCATAATGTCGGACTTAATTATCTA
ACTCTGTCTCGGTCTGCGGGAACATTGTCGGGTGGGGAGAGTCAGCGGATCCGCTTGGCGACTCAAATCGGCTCTAATCT
CAGCGGTGTTCTTTATATCTTAGATGAGCCTTCTATCGGTCTTCATCAGCGGGATAACAATCGCTTGATTGCCAGTCTCA
AAAAAATGCGTGATTTGGGTAATACCCTCATTGTGGTTGAACATGATGAAGATACTATGCGCGAAGCTGATTGGTTGATT
GATGTTGGACCTGGAGCAGGTGTTTTCGGTGGCGAAATTGTTGCGGCAGGCACGCCTGATCAAGTTGCGAAAAACAAAAA
ATCCATTACAGGTCAATACTTGTCAGGTAAACGCAAGATTGAAGTTCCGCTAGAACGCCGAGTTGGAAATGGGCGCTTTA
TCGAAATCACAGGTGCGCGAGAGCACAATTTGCAAAACATCACGGCCCGCTTCCCGTTAGGAAAATTTATAGCCGTGACG
GGAGTTTCCGGTTCTGGGAAATCCACCTTGGTTAATTCCATTTTGAAAAGGGCAATTGCGCAAAAGCTCAATCGTAATTC
AGACAAACCGGGTAAATTCAAAAATATTTCAGGAATTGAGCATATTGATCGTTTGATTGATATTGACCAAAGCCCGATTG
GACGGACTCCTCGCTCCAATCCTGCTACTTATACTGGGGTTTTCGATGATATTCGTGACCTTTTTGCCAAGACCAATGAA
GCCAAAATTCGCGGTTATAAAAAAGGACGTTTCAGTTTTAATGTCAAAGGCGGACGTTGCGAAGCCTGCTCTGGGGATGG
GATTATCAAGATTGAGATGCACTTTTTACCAGATGTTTATGTTCCTTGTGAGGTTTGCCATGGAACACGGTACAATAGTG
AAACCTTGGAAGTGCATTATAAGGAAAAGAATATCGCACAAGTTTTGGATATGACGGTCAATGACGCAGTCGAATTCTTC
AAACATATTCCGAAAATCGAGCGCAAATTACAAACGATTAAAGATGTTGGGCTAGGTTATGTGACTTTGGGACAACCAGC
CACAACTCTTTCTGGTGGGGAAGCACAGCGCATGAAGCTGGCTTCTGAGTTGCACAAACGTTCCACAGGGAAATCTTTCT
ACATATTGGATGAGCCAACTACAGGTCTGCACACGGAGGATATTGCGAAACTTCTCCAAGTGCTATCACGTTTTGTAGAC
GATGGCAACACGGTTCTCGTCATCGAACATAATTTGGACGTTATTAAGACAGCCGATTACATTATTGACCTTGGACCAGA
AGGTGGTATTGGCGGAGGTACTATTATTGCTACTGGTACACCGGAAGAAGTAGCTGCAAACTCTGCTAGCTATACTGGCC
AGTATCTAAAAGGAAAGTTAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

89.149

99.894

0.891

  uvrA Streptococcus pneumoniae TIGR4

89.149

99.894

0.891

  uvrA Streptococcus pneumoniae D39

89.149

99.894

0.891