Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   HBNCFIEN_RS15570 Genome accession   NZ_CP059576
Coordinates   3561901..3562584 (-) Length   227 a.a.
NCBI ID   WP_182391964.1    Uniprot ID   A0A7G4RKK9
Organism   Legionella sp. PC997     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3556901..3567584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBNCFIEN_RS15545 (HBNCFIEN_03136) gap 3557265..3558257 (+) 993 WP_182391960.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  HBNCFIEN_RS15550 (HBNCFIEN_03137) - 3558278..3559468 (+) 1191 WP_182391961.1 phosphoglycerate kinase -
  HBNCFIEN_RS15555 (HBNCFIEN_03138) pyk 3559452..3560873 (+) 1422 WP_182391962.1 pyruvate kinase -
  HBNCFIEN_RS15565 (HBNCFIEN_03140) - 3561040..3561681 (-) 642 WP_182391963.1 hypothetical protein -
  HBNCFIEN_RS15570 (HBNCFIEN_03141) rocC 3561901..3562584 (-) 684 WP_182391964.1 ProQ/FinO family protein Regulator
  HBNCFIEN_RS15575 (HBNCFIEN_03142) - 3562853..3563047 (+) 195 WP_182391965.1 hypothetical protein -
  HBNCFIEN_RS15580 (HBNCFIEN_03143) dapB 3563064..3563795 (+) 732 WP_182391966.1 4-hydroxy-tetrahydrodipicolinate reductase -
  HBNCFIEN_RS15585 (HBNCFIEN_03144) glmM 3564025..3565368 (+) 1344 WP_182391967.1 phosphoglucosamine mutase -
  HBNCFIEN_RS15590 (HBNCFIEN_03145) - 3565408..3566259 (-) 852 WP_182391968.1 hypothetical protein -
  HBNCFIEN_RS15595 (HBNCFIEN_03146) - 3566256..3566882 (-) 627 WP_182391969.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25602.10 Da        Isoelectric Point: 10.5713

>NTDB_id=470921 HBNCFIEN_RS15570 WP_182391964.1 3561901..3562584(-) (rocC) [Legionella sp. PC997]
MRKQELHPRTAVINKAQKNSSKKARTDALLWLAAHFPAAFDNSLRIRPLKVGIMDDILLHADEAEKSGISKSKLREAVVI
FTRRLDYLACLKLREMRVDLQGNEVAEVSEEEAEHAATKIRKRVEKSVRNARKTQVEKTTNQAASTPQNTTFQSQVTTQS
SSSTEAHFPTYPVRSSTYNSLNTPTQPTRTTAVVVKNKTTRQYDPDAVARLKEKLGLSRSEKKEIIE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=470921 HBNCFIEN_RS15570 WP_182391964.1 3561901..3562584(-) (rocC) [Legionella sp. PC997]
ATGAGAAAACAGGAGCTGCACCCACGCACCGCCGTTATTAATAAAGCTCAAAAAAATAGTTCTAAAAAAGCACGAACAGA
TGCCTTATTGTGGCTCGCTGCACATTTTCCCGCAGCATTCGATAATTCATTAAGAATCCGTCCATTAAAAGTGGGGATTA
TGGATGACATTTTGCTGCATGCCGATGAAGCTGAAAAATCAGGAATTTCCAAAAGTAAATTAAGAGAAGCCGTGGTTATA
TTTACGCGTCGACTTGATTATTTGGCATGCCTCAAGCTACGAGAGATGCGTGTTGATTTACAAGGTAACGAAGTTGCTGA
GGTAAGTGAAGAAGAGGCGGAACATGCTGCGACCAAAATTAGAAAACGTGTTGAAAAAAGTGTAAGAAACGCTCGAAAAA
CGCAAGTAGAAAAGACGACAAATCAAGCCGCTTCTACCCCACAAAATACGACTTTTCAATCGCAGGTAACGACCCAATCG
TCCTCATCCACTGAGGCTCACTTTCCTACCTATCCAGTCCGTTCTTCAACCTATAACAGCTTAAATACCCCAACACAACC
CACGAGAACTACGGCGGTAGTCGTTAAAAATAAAACGACAAGGCAATATGATCCAGATGCAGTAGCACGTTTGAAAGAGA
AATTGGGTTTATCTCGAAGTGAGAAAAAGGAAATCATCGAATAA

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(27-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G4RKK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

66.522

100

0.674