Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   HBNCFIEN_RS09120 Genome accession   NZ_CP059576
Coordinates   2133253..2133591 (-) Length   112 a.a.
NCBI ID   WP_182390800.1    Uniprot ID   -
Organism   Legionella sp. PC997     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2128253..2138591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBNCFIEN_RS09100 (HBNCFIEN_01839) - 2128775..2129668 (+) 894 WP_182390796.1 LirA/MavJ family T4SS effector -
  HBNCFIEN_RS09105 (HBNCFIEN_01840) - 2129717..2131012 (-) 1296 WP_182390797.1 MFS transporter -
  HBNCFIEN_RS09110 (HBNCFIEN_01841) - 2131171..2132265 (-) 1095 WP_182390798.1 anhydro-N-acetylmuramic acid kinase -
  HBNCFIEN_RS09115 (HBNCFIEN_01842) - 2132407..2133183 (-) 777 WP_182390799.1 TatD family hydrolase -
  HBNCFIEN_RS09120 (HBNCFIEN_01843) pilZ 2133253..2133591 (-) 339 WP_182390800.1 PilZ domain-containing protein Machinery gene
  HBNCFIEN_RS09125 (HBNCFIEN_01844) - 2133649..2134611 (-) 963 WP_182390801.1 DNA polymerase III subunit -
  HBNCFIEN_RS09130 (HBNCFIEN_01845) tmk 2134608..2135246 (-) 639 WP_182390802.1 dTMP kinase -
  HBNCFIEN_RS09135 (HBNCFIEN_01846) mltG 2135246..2136241 (-) 996 WP_182390803.1 endolytic transglycosylase MltG -
  HBNCFIEN_RS09140 (HBNCFIEN_01847) fabF 2136242..2137480 (-) 1239 WP_182393665.1 beta-ketoacyl-ACP synthase II -
  HBNCFIEN_RS09145 (HBNCFIEN_01848) acpP 2137552..2137800 (-) 249 WP_003631752.1 acyl carrier protein -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12528.53 Da        Isoelectric Point: 7.8131

>NTDB_id=470911 HBNCFIEN_RS09120 WP_182390800.1 2133253..2133591(-) (pilZ) [Legionella sp. PC997]
MDTIQQINCSFPNESTLYKAYMPFLKGGGLFIRTNTNYLFGSIVKLSIKLMDEDELHVVEGKVIWITPKGAQGNKVPGIG
VQFIGENSRYVCNRIETYLAGMLKSSQLTDTM

Nucleotide


Download         Length: 339 bp        

>NTDB_id=470911 HBNCFIEN_RS09120 WP_182390800.1 2133253..2133591(-) (pilZ) [Legionella sp. PC997]
ATGGATACTATACAACAGATTAATTGCTCGTTTCCTAATGAATCGACTCTTTATAAGGCTTATATGCCTTTTTTGAAAGG
AGGCGGCTTATTTATCCGTACGAACACGAATTATTTATTTGGTTCAATAGTTAAACTCTCAATTAAATTAATGGATGAAG
ATGAACTCCATGTAGTTGAGGGTAAAGTTATTTGGATTACTCCTAAAGGAGCGCAGGGTAATAAAGTGCCAGGGATTGGC
GTGCAATTTATTGGAGAAAATAGCCGCTATGTATGTAATAGAATAGAGACCTATTTAGCAGGCATGTTAAAATCTTCCCA
GTTAACAGATACCATGTAA

Domains

Predicted by InterproScan.

PilZ domain (PilZ)

(8-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

69.444

96.429

0.67
  pilZ Legionella pneumophila strain ERS1305867

69.444

96.429

0.67