Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   H3L91_RS08490 Genome accession   NZ_CP059571
Coordinates   1726130..1729330 (+) Length   1066 a.a.
NCBI ID   WP_007343336.1    Uniprot ID   F2BF24
Organism   Neisseria bacilliformis strain DSM 23338     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1721130..1734330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L91_RS08460 (H3L91_08460) - 1722227..1722682 (-) 456 WP_007343330.1 cytochrome c -
  H3L91_RS08465 (H3L91_08465) - 1723003..1723440 (-) 438 WP_007343331.1 YiiD C-terminal domain-containing protein -
  H3L91_RS08470 (H3L91_08470) - 1723514..1723771 (-) 258 WP_007343332.1 Txe/YoeB family addiction module toxin -
  H3L91_RS08475 (H3L91_08475) - 1723768..1724019 (-) 252 WP_007343333.1 type II toxin-antitoxin system prevent-host-death family antitoxin -
  H3L91_RS08480 (H3L91_08480) - 1724187..1725473 (-) 1287 WP_007343334.1 N-acetylmuramoyl-L-alanine amidase -
  H3L91_RS08485 (H3L91_08485) tsaE 1725443..1725928 (-) 486 WP_040659026.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  H3L91_RS08490 (H3L91_08490) recC 1726130..1729330 (+) 3201 WP_007343336.1 exodeoxyribonuclease V subunit gamma Machinery gene
  H3L91_RS08495 (H3L91_08495) - 1730192..1730452 (-) 261 WP_007343339.1 hypothetical protein -
  H3L91_RS08500 (H3L91_08500) - 1730470..1730748 (-) 279 WP_007343340.1 hypothetical protein -
  H3L91_RS08505 (H3L91_08505) - 1730770..1731153 (-) 384 WP_007343341.1 hypothetical protein -
  H3L91_RS08510 (H3L91_08510) - 1731281..1732027 (-) 747 WP_007343342.1 formylglycine-generating enzyme family protein -
  H3L91_RS08515 (H3L91_08515) - 1732062..1732586 (-) 525 WP_040659028.1 cytochrome c -
  H3L91_RS08520 (H3L91_08520) nirK 1732863..1734101 (-) 1239 WP_007343344.1 copper-containing nitrite reductase -

Sequence

Protein


Download         Length: 1066 a.a.        Molecular weight: 120059.73 Da        Isoelectric Point: 6.2586

>NTDB_id=470870 H3L91_RS08490 WP_007343336.1 1726130..1729330(+) (recC) [Neisseria bacilliformis strain DSM 23338]
MLRLYQSNRLEDLAAMLQKVQQTKPLSEPLLPEEIIVQSQGMRRFIGNYLAEHGGIAANIRFSLPAGFNWRLTRALLPDI
PELSPFDTEVMRWRLLGLFVSDGLSRPETAQAQAALSGYLCGGGAAAYQLAGELADIFDQYLVYRPDWIDAWQRDRLLGL
GGDEAWQAELWRFLNDGQTAPHRVEMWHRLEQALQSPPDGLLPERICVFGITALAPMYLQLLHALAQHTEVHIFALNPAS
EYWGNIIEPAQILAAGGDADPAAAGHPLLASLGKQGRDFFNALAESEASTDLSAYPEAPLSDSLLHRLQYGLQTLTLPDK
TATLDDSIRIVCAHSPLRELQILKDRLLELLAHDPTLQPRDIAVLTPNIEPYAPYIEAVFGQESGRPLPYSVADVKLSRR
RPLLHAAEQTLAIFESRFEADKILGLLDTEPVLQRFGLTREDLPLLHDTIEHLNIRWGWDETMRGGADPLFTWQQGLDRI
ILGWILPDNGELWQNHAPWHTDPAVIPLLARLAAFLRRLARWRQTWQTPATVAVWTQRITDMLQDLFVQDNQARQDMQQL
AQALARWRQETELARFGGELDCSVINRHLARYLGSRSEAGFLRGGITFCSMVPMRSLPFQTLCLLGLNDGQFPRNTRAAA
FDLIARHPRRGDRARRDDDRYLFLEALLSARQHLHLSYVGRSIHNNEALAPSALLNELADCLADMTGQTASAITEQHTQQ
HPLQAYSPRYFDNSGLTSSRADYAAALNRPSENPAPFYTAPLTGDTPPQSVAHNDFLDFWKNPVRHWLRRNLDWRAPYHT
QATPTNEPFAPTDERETAAAYTQARLLHQNFTDTAARLTARSLLPAGQIGALWRGQYETAAKNLDQTLLDSPPLPDTHYQ
YHSDGLTLHGSLTRLHRHGQIHLLDHRPNAPERTALLLQHLIYNAVRPEEAADLRSHWIQPDHTDTLPPIPQQHAQTLLD
AWIAWWRTGQTQPLPYFPKTTLAAAEALLKNSKKSDTERRRAAHKAAYTAYFANKAGTPQADYPEVAQVFGRNNTPPIDE
DPFWLLAEHLAHLLAATEQTEQTPPP

Nucleotide


Download         Length: 3201 bp        

>NTDB_id=470870 H3L91_RS08490 WP_007343336.1 1726130..1729330(+) (recC) [Neisseria bacilliformis strain DSM 23338]
ATGCTCCGTCTCTACCAGTCCAACCGCCTCGAAGATTTGGCCGCCATGCTGCAAAAAGTGCAGCAGACCAAGCCGCTGTC
CGAGCCGCTGCTGCCGGAAGAAATCATCGTGCAAAGCCAGGGCATGCGGCGTTTCATCGGCAACTATCTGGCCGAACACG
GCGGCATCGCCGCCAACATCCGCTTCTCCCTGCCCGCCGGCTTCAACTGGCGGCTCACGCGCGCCCTGCTGCCCGACATC
CCCGAACTCAGCCCCTTCGACACCGAAGTCATGCGCTGGCGGCTGTTGGGGCTGTTTGTTTCAGACGGCCTCTCCCGCCC
CGAAACCGCGCAGGCGCAGGCCGCCCTCTCGGGCTACCTCTGCGGCGGCGGCGCGGCGGCCTACCAGCTTGCCGGCGAGC
TTGCCGACATCTTCGACCAATACCTCGTCTACCGCCCCGACTGGATAGACGCCTGGCAGCGCGACAGACTGCTCGGCCTG
GGCGGCGACGAAGCCTGGCAGGCCGAACTGTGGCGTTTCCTAAACGACGGCCAAACCGCGCCCCACCGCGTAGAAATGTG
GCACAGGCTCGAACAAGCCCTCCAATCCCCGCCCGACGGCCTGCTGCCCGAACGCATCTGCGTCTTCGGCATCACCGCCC
TCGCCCCGATGTACCTGCAACTGCTGCACGCCCTCGCGCAACACACCGAAGTGCACATCTTCGCCCTCAACCCCGCCTCC
GAATACTGGGGCAACATCATCGAACCCGCGCAAATCCTCGCCGCAGGCGGCGATGCCGACCCCGCCGCCGCCGGACACCC
CCTGCTCGCCTCACTGGGCAAACAAGGGCGCGACTTCTTCAACGCCCTCGCCGAAAGCGAAGCCTCCACCGACCTTTCCG
CCTACCCCGAAGCCCCCCTGTCCGACAGCCTCCTCCACCGCCTGCAATACGGCCTGCAAACCCTCACCCTGCCCGACAAA
ACCGCCACGCTGGACGACAGCATCCGCATCGTCTGCGCCCACAGCCCCCTGCGCGAATTGCAAATCCTCAAAGACCGCCT
GCTCGAACTCCTCGCGCACGACCCAACCCTCCAACCCCGCGACATCGCCGTCCTCACCCCCAACATCGAACCCTACGCCC
CCTACATCGAAGCCGTGTTCGGACAAGAAAGCGGCCGCCCCCTGCCCTACTCCGTCGCCGACGTCAAACTCAGCCGCCGC
CGCCCCCTGCTCCACGCCGCCGAACAAACCCTCGCCATCTTCGAGAGCCGCTTTGAAGCCGACAAAATCCTCGGCCTGCT
CGACACCGAACCCGTCCTCCAACGCTTCGGCCTCACCCGCGAAGACCTCCCCCTGCTGCACGACACCATCGAACACCTCA
ACATCCGCTGGGGCTGGGACGAAACCATGCGCGGCGGCGCAGACCCCCTCTTCACCTGGCAGCAAGGACTCGACCGCATC
ATCCTCGGCTGGATACTGCCCGACAACGGCGAACTCTGGCAAAACCACGCCCCCTGGCACACCGACCCCGCCGTCATCCC
CCTCCTCGCCCGCCTCGCCGCCTTCCTCCGCCGCCTCGCCCGCTGGCGGCAAACCTGGCAAACCCCTGCCACCGTCGCCG
TCTGGACACAACGCATCACCGACATGCTGCAAGACCTCTTCGTCCAAGACAACCAAGCCCGCCAAGACATGCAGCAGCTC
GCCCAAGCCCTCGCCCGCTGGCGGCAGGAAACCGAACTCGCCCGCTTCGGCGGCGAACTCGATTGCAGCGTCATCAACCG
CCACCTCGCCCGCTACCTCGGCAGCCGCAGCGAAGCCGGCTTCCTGCGCGGCGGCATCACCTTTTGCAGCATGGTACCCA
TGCGTTCCCTCCCCTTCCAAACCCTCTGCCTGCTCGGCCTCAACGACGGCCAATTCCCCCGCAACACCCGCGCCGCCGCC
TTCGACCTCATCGCCCGCCACCCCCGCAGAGGCGACAGAGCCCGCCGCGACGACGACCGCTACCTCTTCCTCGAAGCCCT
CCTCAGCGCGCGCCAACACCTCCACCTCTCCTACGTCGGCCGCAGCATCCACAACAACGAAGCCCTCGCCCCCTCCGCCC
TGCTCAACGAACTGGCCGACTGCCTCGCCGACATGACCGGCCAAACCGCATCCGCCATCACCGAACAACACACCCAGCAA
CACCCTCTGCAAGCCTACTCCCCCCGCTACTTCGACAACAGCGGCCTCACCAGCAGCCGCGCCGACTACGCCGCCGCCCT
CAACAGGCCGTCTGAAAACCCCGCCCCCTTCTACACCGCCCCCCTCACCGGCGACACCCCGCCCCAAAGCGTCGCCCACA
ACGACTTCCTCGACTTCTGGAAAAACCCCGTCCGCCACTGGCTGCGCCGCAACCTCGACTGGCGCGCCCCCTACCACACC
CAAGCAACCCCAACCAACGAACCCTTCGCCCCCACCGACGAGCGCGAAACCGCCGCCGCCTACACCCAAGCCCGCCTACT
GCACCAAAACTTCACCGACACCGCCGCCCGCCTCACCGCCCGCTCCCTCCTCCCCGCCGGCCAAATCGGCGCACTCTGGC
GCGGACAATACGAAACCGCCGCCAAAAACCTCGACCAAACCCTGCTCGACAGCCCCCCCCTGCCCGACACCCACTACCAA
TACCATTCAGACGGCCTCACCCTCCACGGCAGCCTCACCCGCCTGCACCGGCACGGACAAATCCACCTCCTCGACCACCG
CCCCAACGCCCCCGAACGCACCGCCCTCCTCCTGCAACACCTCATCTACAACGCCGTCCGCCCCGAAGAAGCCGCCGACC
TGCGCAGCCACTGGATACAGCCCGACCACACCGACACCCTTCCCCCCATCCCGCAGCAACATGCCCAAACCCTCCTCGAC
GCCTGGATCGCCTGGTGGCGCACCGGCCAAACCCAACCCCTGCCCTACTTCCCCAAAACCACCCTCGCCGCCGCCGAAGC
CCTGCTGAAAAACAGTAAAAAAAGCGACACCGAACGCCGCCGCGCCGCCCACAAAGCCGCCTACACCGCCTACTTCGCCA
ACAAAGCCGGCACCCCCCAGGCCGACTACCCCGAAGTCGCCCAAGTCTTCGGCCGCAACAACACCCCACCCATCGACGAA
GACCCCTTCTGGCTCCTCGCCGAACACCTCGCCCACCTCCTCGCCGCCACAGAACAAACCGAACAAACACCCCCGCCGTA
G

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-310)

RecC C-terminal domain (RecC_C)

(769-987)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2BF24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

52.509

100

0.53