Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   H3L91_RS07320 Genome accession   NZ_CP059571
Coordinates   1482226..1485801 (-) Length   1191 a.a.
NCBI ID   WP_040658953.1    Uniprot ID   -
Organism   Neisseria bacilliformis strain DSM 23338     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1477226..1490801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L91_RS07295 (H3L91_07295) - 1478102..1478296 (+) 195 WP_040658951.1 zinc-finger domain-containing protein -
  H3L91_RS07300 (H3L91_07300) - 1478503..1479591 (-) 1089 WP_007343039.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein -
  H3L91_RS07305 (H3L91_07305) - 1479614..1480201 (-) 588 WP_007343040.1 acyltransferase -
  H3L91_RS12485 - 1480278..1480406 (-) 129 WP_007343041.1 hypothetical protein -
  H3L91_RS07310 (H3L91_07310) - 1480454..1481422 (-) 969 WP_007343042.1 PhoH family protein -
  H3L91_RS07315 (H3L91_07315) - 1481542..1482087 (-) 546 WP_007343043.1 TIGR00645 family protein -
  H3L91_RS07320 (H3L91_07320) recB 1482226..1485801 (-) 3576 WP_040658953.1 exodeoxyribonuclease V subunit beta Machinery gene
  H3L91_RS07325 (H3L91_07325) ppsA 1485983..1488370 (-) 2388 WP_007343045.1 phosphoenolpyruvate synthase -
  H3L91_RS07330 (H3L91_07330) - 1488770..1489588 (+) 819 WP_007343047.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 1191 a.a.        Molecular weight: 132627.99 Da        Isoelectric Point: 6.6123

>NTDB_id=470867 H3L91_RS07320 WP_040658953.1 1482226..1485801(-) (recB) [Neisseria bacilliformis strain DSM 23338]
MPHTAQPFDPLAIPIGGTALIEASAGTGKTYGIAALFTRLILLEKLPVDKVLVVTFTKAATAELKTRLRARLDEALRRIR
GDATESPADPFMQKLLAQAAAQEPRERLEMRLKAALSQFDNAAIYTIHGFCQRILGDYAFLCQVPFDTELDENGRRELET
YAQDFWRLHVAPDPQNARLAFEAGLLPDTLLQEFSRALSRPDLVFRRPQTDLAQAEAAAAEEWQAFRQQFADACAAFRRI
HPVLNGSKFRKSSYEDKFAELARLVQTQERPSEKIVSLLQNSNGEDVFSPEYLARDTSVKKGCALSAADIAALSPFHRVR
QAAAALTAASRDALTALQLDFLQYVRQTADAQRQTRQTRSPDDLLLDLYHALTAGAHSEQLAQTVAQNWPFALIDEFQDT
DPLQYEIFRRIFVANGRPLFLVGDPKQAIYGFRGADIHAYLQAAADTPNRYTLAHNYRSHSRLTDTVGSLFTRKNRPFVL
EGIAYPAVSAPRAESRVSPPQPAVRVRWLHGADETEANKDTLRQRAADYCADEIAALLNLAAEGRLNVNGCPAESGQIAV
LVHSHNQGRMVKRALAARNIRSVSVQRESVFQSPEAQALAALLDFWLEPRRAEPLRFVLGGVLFSRTAQELYELNRNEKS
LSEHIAAAEQCREIWQRQGIYAALTAFARRYGLETRLLAQRNERSLTNFWQLAELLAAEDEAAHSPPSLRNWLLSQMQDA
SAAENTVLRLESDEALVKIVTIHASKGLQYPFVFCPFSWDTSEARGAMWHILRREHGSELLAAAQLGEADQNQLADEDLG
ERLRLLYVALTRAEEQLVLYAAACKSKKNSRLNTFAYLLAGRPDDTRAQVQTACASVENPAALLRQNWLDWIDAAPANAV
LWQEGAPPAAVLRPSRPRTSEYRAAEYPPRRFEFVRHTSFTGLTRSLAHSGTQDETADEMQPALDNAERLPLPESAPDAP
AAYDIFHFPQGAQAGVCLHEILEKHRFGRPAAEQHPLIADTLERYGYGAEWLPAVAQTVQHTADADLWRGDTLAALPGVR
RISETGFVMHFDQLDTGRLKNSLAAAGLSPACLAAAEKLDFGTLKGFLNGYIDMTCLLSDGQPCVIDYKSNHLGHRPEDY
APAALDAAMAEHHYYLQAWIYALAAARMLQQRRHPVSTVRVRYLFLRGLNGAGQGGIWQWDIAAQHLTPWL

Nucleotide


Download         Length: 3576 bp        

>NTDB_id=470867 H3L91_RS07320 WP_040658953.1 1482226..1485801(-) (recB) [Neisseria bacilliformis strain DSM 23338]
ATGCCCCACACCGCCCAACCGTTTGACCCGCTCGCCATCCCCATCGGCGGCACCGCCCTGATCGAAGCCTCCGCCGGCAC
CGGCAAAACCTACGGCATCGCCGCCCTGTTCACCCGCCTGATCCTGCTGGAAAAGCTGCCCGTGGACAAAGTGCTGGTCG
TAACCTTCACCAAAGCCGCCACCGCCGAATTGAAAACCCGCCTGCGCGCGCGGCTGGACGAGGCTTTGCGCCGTATCCGT
GGCGACGCAACCGAAAGCCCGGCCGACCCGTTCATGCAGAAGCTGCTCGCGCAGGCGGCGGCACAAGAGCCGCGCGAACG
GCTGGAAATGCGCCTGAAAGCCGCGCTCTCGCAGTTCGACAACGCCGCGATCTACACCATACACGGCTTCTGCCAGCGGA
TTTTGGGCGACTACGCCTTCCTCTGCCAAGTGCCCTTCGACACCGAGCTGGACGAAAACGGCCGCCGCGAGCTGGAAACC
TACGCGCAGGACTTCTGGCGGCTCCACGTCGCCCCCGACCCGCAAAACGCGCGGCTGGCCTTCGAGGCCGGCCTGCTGCC
CGACACGCTGTTGCAGGAATTCTCCCGCGCCCTCTCACGCCCCGACCTCGTTTTCAGACGGCCTCAAACCGATTTGGCGC
AGGCCGAAGCGGCGGCGGCCGAAGAATGGCAGGCGTTCCGGCAGCAGTTTGCCGACGCGTGCGCGGCATTCCGGCGCATC
CATCCCGTATTGAACGGCAGCAAATTCCGCAAAAGCAGCTACGAAGACAAATTCGCCGAACTCGCCCGCCTGGTGCAAAC
CCAAGAACGGCCGTCTGAAAAAATCGTTTCGCTGCTGCAAAACAGCAACGGCGAAGACGTGTTTTCGCCCGAATACCTCG
CCCGCGACACCTCGGTCAAAAAAGGCTGCGCCCTCTCCGCAGCCGACATCGCCGCCCTATCGCCCTTCCACCGCGTCCGC
CAAGCCGCCGCCGCGCTGACCGCCGCCTCCCGCGACGCCCTCACCGCCCTGCAACTCGACTTTCTGCAATACGTGCGCCA
AACCGCCGACGCGCAGCGGCAGACGCGCCAAACGCGCAGCCCCGACGATCTGCTGCTCGACCTCTACCACGCCCTCACCG
CCGGCGCGCATTCGGAACAGCTCGCGCAAACCGTGGCGCAAAACTGGCCGTTCGCCCTTATCGACGAATTCCAAGACACC
GATCCGCTGCAATACGAAATCTTCCGCCGCATCTTTGTAGCAAACGGCCGCCCGCTGTTTCTCGTCGGCGACCCCAAACA
GGCCATCTACGGCTTTCGCGGCGCAGACATCCACGCCTATCTGCAAGCCGCCGCCGACACCCCCAACCGCTACACCCTCG
CGCACAACTACCGCAGCCACAGCCGCCTCACCGACACCGTCGGCAGCCTGTTCACGCGCAAAAACCGCCCCTTTGTGCTC
GAAGGCATCGCCTATCCCGCCGTGTCCGCCCCCCGCGCCGAAAGCCGCGTCAGCCCGCCGCAACCTGCCGTGCGCGTGCG
CTGGCTGCACGGTGCGGACGAAACCGAAGCTAACAAAGACACCCTGCGCCAACGCGCCGCCGACTACTGCGCCGACGAAA
TCGCCGCCCTGCTCAACCTCGCGGCAGAAGGCCGTCTGAATGTCAACGGCTGCCCCGCGGAATCCGGCCAAATCGCCGTC
CTCGTCCACAGCCATAACCAGGGACGCATGGTCAAACGCGCCCTGGCCGCGCGCAACATCCGCAGCGTGTCCGTGCAGCG
CGAATCCGTGTTCCAAAGCCCCGAAGCCCAAGCCCTCGCCGCCCTCTTGGACTTCTGGCTCGAACCCCGGCGCGCCGAGC
CGCTGCGCTTCGTCCTCGGCGGCGTCCTGTTCAGCCGCACCGCCCAAGAGCTTTACGAGTTGAACCGCAACGAAAAAAGC
CTGTCTGAACACATCGCCGCCGCTGAACAATGCCGCGAAATCTGGCAGCGGCAGGGCATCTACGCCGCCCTCACCGCCTT
CGCCCGCCGCTACGGCCTCGAAACCCGCCTGCTCGCCCAGCGCAACGAACGCAGCCTCACCAACTTCTGGCAGCTGGCCG
AACTCCTCGCCGCCGAAGACGAAGCCGCCCACAGTCCCCCTTCGCTGCGCAACTGGCTGCTCTCGCAGATGCAGGACGCG
TCCGCCGCCGAAAACACCGTCCTGCGCCTCGAAAGCGACGAAGCACTCGTCAAAATCGTAACCATCCACGCATCCAAGGG
TCTGCAATACCCCTTTGTTTTCTGCCCCTTCTCGTGGGACACCTCCGAAGCGCGCGGCGCAATGTGGCACATCCTGCGCC
GCGAACACGGCAGTGAACTGCTCGCCGCCGCCCAACTCGGCGAAGCCGACCAAAACCAGCTCGCCGACGAAGATCTCGGC
GAACGCCTGCGCCTGCTTTATGTCGCTCTTACCCGCGCCGAAGAACAACTCGTCCTCTACGCCGCCGCCTGCAAAAGCAA
AAAAAACAGCAGGCTCAACACCTTCGCCTACCTGCTCGCCGGCCGCCCCGACGACACCCGCGCCCAAGTTCAGACGGCCT
GCGCCAGCGTGGAAAACCCCGCCGCCCTGCTGCGCCAAAACTGGCTGGACTGGATAGACGCCGCCCCCGCAAACGCCGTG
TTGTGGCAGGAAGGCGCGCCCCCCGCCGCCGTCCTGCGCCCAAGCCGCCCCCGCACAAGCGAATACCGCGCCGCCGAATA
CCCCCCGCGCCGCTTCGAGTTTGTCCGCCACACCAGCTTCACCGGCCTCACCCGCAGCCTCGCCCACAGCGGCACGCAGG
ACGAAACCGCCGACGAAATGCAGCCCGCCCTCGACAACGCCGAACGCCTGCCGCTCCCCGAAAGCGCGCCGGACGCACCG
GCCGCATACGACATCTTCCACTTCCCCCAAGGCGCACAGGCCGGCGTCTGCCTGCACGAAATCCTCGAAAAACACCGCTT
CGGCCGCCCCGCCGCCGAACAGCACCCCCTCATCGCCGACACCCTCGAACGCTACGGCTACGGCGCGGAATGGCTGCCAG
CCGTCGCCCAAACCGTGCAGCACACCGCCGACGCCGACCTCTGGCGGGGCGACACCCTCGCCGCCCTCCCGGGCGTGCGC
CGCATCAGCGAAACCGGCTTCGTCATGCATTTCGACCAACTCGACACAGGCCGTCTGAAAAACAGCCTCGCCGCCGCCGG
CCTCTCCCCCGCCTGCCTCGCCGCCGCCGAAAAACTCGACTTCGGTACCCTCAAAGGCTTCCTCAACGGCTACATCGACA
TGACCTGCCTGCTTTCAGACGGCCAACCCTGCGTCATCGACTACAAATCCAACCACCTCGGCCACCGCCCCGAAGACTAC
GCCCCCGCCGCCCTCGACGCGGCCATGGCCGAACACCACTACTACCTGCAAGCCTGGATCTACGCCCTCGCCGCCGCCCG
CATGCTGCAACAACGCCGCCACCCCGTCTCCACCGTGCGCGTCCGCTACCTCTTCCTGCGCGGCCTGAACGGGGCAGGGC
AGGGCGGCATCTGGCAGTGGGACATCGCCGCGCAACACCTCACCCCGTGGCTGTAA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-446)

UvrD-like helicase C-terminal domain (UvrD_C)

(451-820)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

51.244

100

0.519