Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   H3L91_RS00155 Genome accession   NZ_CP059571
Coordinates   28849..30261 (+) Length   470 a.a.
NCBI ID   WP_007341332.1    Uniprot ID   F2B9B6
Organism   Neisseria bacilliformis strain DSM 23338     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 23849..35261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L91_RS00130 (H3L91_00130) - 24498..24902 (-) 405 WP_007341327.1 SRPBCC family protein -
  H3L91_RS00135 (H3L91_00135) - 24948..25616 (-) 669 WP_007341328.1 DNA alkylation repair protein -
  H3L91_RS00140 (H3L91_00140) - 25788..27083 (-) 1296 WP_007341329.1 pitrilysin family protein -
  H3L91_RS00145 (H3L91_00145) - 27080..28474 (-) 1395 WP_007341330.1 pitrilysin family protein -
  H3L91_RS00150 (H3L91_00150) - 28510..28833 (+) 324 WP_244958468.1 hypothetical protein -
  H3L91_RS00155 (H3L91_00155) pilA 28849..30261 (+) 1413 WP_007341332.1 signal recognition particle-docking protein FtsY Machinery gene
  H3L91_RS00160 (H3L91_00160) - 30542..31852 (-) 1311 WP_007341334.1 peptidoglycan DD-metalloendopeptidase family protein -
  H3L91_RS00165 (H3L91_00165) - 32023..32934 (+) 912 WP_007341335.1 hypothetical protein -
  H3L91_RS00170 (H3L91_00170) - 33143..33646 (+) 504 WP_040658480.1 phosphatidylglycerophosphatase A -
  H3L91_RS00175 (H3L91_00175) - 33951..34889 (-) 939 WP_007341337.1 Dyp-type peroxidase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49929.71 Da        Isoelectric Point: 4.3974

>NTDB_id=470849 H3L91_RS00155 WP_007341332.1 28849..30261(+) (pilA) [Neisseria bacilliformis strain DSM 23338]
MALFDFLFNRKTDTPPAPAQTPVSDGLQDTQRPSENTQGGPNAPEPAAETEREKFLNEIRKTGSSSQRSGLLRPDAEPES
TESAAVSDGLPDAAAAQDTERPSENPSDSAETAEQPPAASVRSETSAEAADHEPATEPEQTAEPEPAQNAEQTAEAAPEN
PPESPEPTGWAARLKQGLGKSRDKMAKSLAGVFGGGKIDDELYEELETVLLTSDMGIEATEHIMEDVRRRVSLKGLSDSG
QLRRALKESLYELLAPLEQPLEIPDNGQPFVIMMAGINGAGKTTSIGKLAKYFQQQGKTVILAAGDTFRAAAREQLQEWG
ARNGVTVVSQAKGDSAAVCYDAVESAKARRTDIVLADTAGRLPTQLHLMEEIKKVKRVLQKAMSDAPHEIIVVLDANIGQ
NAVNQVIAFDDALGVTGLIVTKLDGTAKGGVLAALAAARPIPVRYIGVGEGIDDLRPFNARAFVDALIDG

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=470849 H3L91_RS00155 WP_007341332.1 28849..30261(+) (pilA) [Neisseria bacilliformis strain DSM 23338]
ATGGCACTATTCGACTTCCTCTTCAACCGCAAAACCGACACCCCGCCCGCCCCCGCCCAAACCCCCGTTTCAGACGGCCT
CCAAGACACACAGAGGCCGTCTGAAAACACGCAAGGCGGGCCAAACGCGCCCGAGCCCGCCGCCGAAACCGAGCGCGAAA
AATTCCTCAACGAAATCCGCAAAACCGGCAGCAGCAGCCAGCGCAGCGGCCTCTTGCGCCCCGATGCCGAACCCGAAAGC
ACCGAATCCGCCGCCGTTTCAGACGGCCTGCCCGATGCAGCGGCGGCGCAGGACACCGAAAGGCCGTCTGAAAACCCGTC
CGACAGCGCGGAAACCGCAGAACAACCCCCCGCCGCGTCCGTCCGCAGCGAAACCTCAGCCGAAGCAGCCGACCACGAGC
CCGCAACCGAGCCCGAACAAACAGCCGAACCCGAGCCCGCCCAAAACGCAGAACAAACCGCCGAAGCAGCCCCCGAAAAC
CCGCCCGAGTCCCCCGAACCCACAGGCTGGGCGGCGCGCCTCAAACAAGGGCTGGGCAAATCGCGCGACAAAATGGCCAA
ATCCCTCGCCGGCGTGTTCGGCGGCGGCAAAATCGACGACGAGCTCTACGAAGAACTCGAAACCGTCCTCCTCACCAGCG
ACATGGGCATCGAAGCCACCGAACACATCATGGAAGACGTGCGCCGCCGCGTCTCCCTCAAAGGACTCTCCGACAGCGGC
CAACTTCGCCGCGCCCTCAAAGAATCCCTGTACGAACTGCTCGCGCCGCTGGAACAGCCCCTCGAAATCCCCGACAACGG
CCAACCCTTCGTCATCATGATGGCCGGCATCAACGGCGCGGGCAAAACCACCTCCATCGGCAAACTCGCCAAATACTTCC
AGCAGCAGGGCAAAACCGTCATCCTCGCCGCCGGCGACACCTTCCGCGCCGCCGCCCGCGAACAGCTGCAAGAATGGGGC
GCGCGCAACGGCGTAACCGTCGTCTCCCAGGCCAAAGGCGACTCCGCCGCCGTCTGCTACGACGCCGTAGAATCCGCCAA
AGCCCGCCGCACCGACATCGTCCTCGCCGACACCGCCGGCCGCCTGCCCACCCAGCTTCATCTGATGGAAGAAATCAAAA
AAGTCAAACGCGTGCTGCAAAAAGCCATGAGCGACGCCCCGCACGAAATCATCGTCGTGCTCGATGCCAACATCGGCCAA
AACGCCGTCAACCAAGTCATCGCCTTCGACGACGCACTGGGCGTAACCGGCCTCATCGTAACCAAGCTCGACGGCACCGC
CAAAGGCGGCGTCCTCGCCGCCCTCGCCGCCGCCCGCCCCATCCCCGTGCGCTACATCGGCGTGGGCGAAGGCATAGACG
ATCTGCGCCCCTTCAACGCCCGCGCCTTCGTGGACGCGCTGATCGACGGCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(184-250)

SRP54-type protein, GTPase domain (SRP54)

(269-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2B9B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

70.027

80.213

0.562