Detailed information    

insolico Bioinformatically predicted

Overview


Name   recG   Type   Machinery gene
Locus tag   H3L92_RS08795 Genome accession   NZ_CP059570
Coordinates   1861107..1863146 (-) Length   679 a.a.
NCBI ID   WP_085366079.1    Uniprot ID   A0A1X3D8G6
Organism   Neisseria dentiae strain DSM 19151     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1860539..1860898 1861107..1863146 flank 209


Gene organization within MGE regions


Location: 1860539..1863146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L92_RS08795 (H3L92_08795) recG 1861107..1863146 (-) 2040 WP_085366079.1 ATP-dependent DNA helicase RecG Machinery gene

Sequence


Protein


Download         Length: 679 a.a.        Molecular weight: 75393.20 Da        Isoelectric Point: 7.9193

>NTDB_id=470837 H3L92_RS08795 WP_085366079.1 1861107..1863146(-) (recG) [Neisseria dentiae strain DSM 19151]
MTPEHQKLLKINDATAKKLAKLNLNTPWDVVLHLPLRYEDETHIMPIADVPIGVPCQVEGEVVHQEVQFKPRKQLVAQIR
DGSGSVLHLRFIHFYPSHQKQLAAGKRIRAVGEIKHGFFGDEMIHPKIRDAESSSLAESLTPVYPTVNGLNQPTLRRIVQ
TALDTVPLHDTLPDDLLGRLKLPHLAESLRLLHAPPPSFTIQQLSNGALPAWQRLKFDELLAQQLSMRLVRQKRISGQAK
PLRGTGEWSQKLLLALPFALTAAQQRVLAEIRADMQQPHPMHRLLQGDVGSGKTIVAALSALTAVEAGCQVAVMAPTEIL
AEQHYAKFKQWFEPLGLSVAWLSGSQRKKAKETNKAAISDGLTQIAVGTHALFQDDVEFQNLGLVIVDEQHRFGVAQRLA
LKNKGQDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPNRTPIKTRLVNSVRRAEVEGFVLNTCRKGQQAYWVCPLIE
ESETLQLQTATETLQTLQTALPELNIGLVHGRMKSAEKAEVMAEFIAGRLNVLVATTVIEVGVDVPNASLMVIEHAERMG
LAQLHQLRGRVGRGAAASTCVLLFSEPLGEVAKARLKVIYQHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LQLLEQAREIAPRLIEERPDIVEKHLDRWLSSREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=470837 H3L92_RS08795 WP_085366079.1 1861107..1863146(-) (recG) [Neisseria dentiae strain DSM 19151]
ATGACCCCCGAACACCAAAAGCTGCTCAAAATCAACGACGCCACGGCCAAGAAGCTCGCGAAGCTCAATCTCAACACGCC
GTGGGACGTGGTGCTGCATCTGCCGCTGCGCTATGAAGACGAAACGCACATCATGCCGATTGCCGATGTGCCGATAGGCG
TGCCGTGTCAGGTGGAGGGGGAGGTGGTTCATCAGGAAGTGCAGTTCAAGCCGCGCAAACAGTTGGTCGCGCAGATACGC
GACGGCTCGGGCAGCGTGCTGCATCTGCGCTTTATCCATTTTTACCCCAGCCATCAAAAGCAGCTCGCGGCGGGCAAACG
CATCCGCGCGGTGGGCGAAATCAAGCACGGGTTTTTCGGCGACGAGATGATACACCCGAAAATCCGCGATGCCGAAAGCA
GCAGCCTGGCCGAAAGCCTCACCCCCGTGTATCCCACCGTTAACGGCCTCAACCAGCCCACGCTGCGCCGTATCGTTCAG
ACGGCCTTGGATACAGTACCGTTGCACGATACGCTGCCCGATGATTTATTAGGCCGTCTGAAACTGCCGCACTTGGCCGA
AAGCCTGCGCCTGCTGCACGCACCGCCGCCGAGCTTCACCATCCAACAGCTTTCAAACGGCGCTTTGCCCGCGTGGCAGC
GGCTGAAGTTCGACGAGTTGCTCGCGCAGCAGCTTTCGATGCGGTTGGTGCGGCAGAAACGCATCAGCGGGCAGGCCAAG
CCCTTGCGCGGCACGGGCGAATGGTCGCAAAAACTGCTCTTGGCGCTGCCGTTCGCACTCACCGCCGCCCAACAGCGTGT
GCTGGCCGAAATCCGCGCCGATATGCAGCAGCCCCACCCCATGCACCGCCTGCTGCAAGGCGACGTGGGCAGCGGCAAAA
CCATCGTGGCTGCGCTCTCGGCGCTCACCGCCGTCGAGGCCGGTTGCCAAGTGGCGGTGATGGCGCCCACCGAAATTCTG
GCCGAACAGCATTACGCCAAGTTCAAACAATGGTTCGAGCCGCTGGGTTTGAGCGTGGCGTGGCTCTCCGGCAGCCAGCG
CAAAAAAGCCAAAGAAACCAATAAAGCCGCCATTTCAGACGGCCTCACCCAAATCGCCGTCGGCACGCACGCCCTGTTTC
AAGACGACGTTGAATTTCAAAATCTCGGTTTAGTGATTGTCGACGAACAGCACCGCTTCGGCGTGGCACAGCGTTTGGCC
CTAAAAAACAAAGGGCAGGACGTGCACCAACTGATGATGTCGGCCACCCCCATTCCGCGCACGCTGGCCATGAGCTTTTT
CGCCGACCTCGACGTTTCGGTGATCGACGAGCTGCCGCCCAACCGCACCCCGATTAAAACCCGCCTCGTCAACAGCGTGC
GCCGCGCCGAAGTGGAAGGCTTTGTGTTGAACACCTGCCGCAAAGGGCAGCAGGCCTATTGGGTTTGCCCGCTGATTGAA
GAGAGCGAAACCCTGCAACTGCAAACCGCCACCGAAACCCTGCAAACACTTCAGACGGCCTTACCCGAATTGAACATCGG
CCTGGTGCACGGGCGCATGAAGAGCGCCGAAAAAGCCGAAGTGATGGCCGAATTTATCGCAGGCCGTCTGAACGTTTTGG
TGGCCACCACCGTTATCGAAGTGGGTGTGGACGTGCCCAACGCCAGCCTGATGGTGATCGAGCACGCCGAACGCATGGGT
TTGGCGCAGCTGCACCAACTGCGCGGCCGTGTGGGGCGCGGTGCCGCCGCCAGCACCTGCGTACTGCTGTTTTCCGAACC
CTTGGGCGAAGTGGCCAAAGCACGCCTGAAAGTGATTTACCAACACACCGACGGCTTTGAAATCGCCCGCCAAGATTTAA
ACATACGCGGCCCCGGCGAATTTCTCGGCGCCCGCCAAAGCGGCGTACCGATGCTGCGTTTCGCCAACCTGGAAGAAGAT
TTGCAGCTCTTGGAACAAGCCCGCGAAATCGCACCGAGGCTGATTGAAGAGCGGCCGGATATTGTGGAGAAACATTTGGA
CAGATGGCTGAGCAGCAGGGAAGGGTATTTGGGGGTGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1X3D8G6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

83.211

100

0.832