Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   H3L92_RS06885 Genome accession   NZ_CP059570
Coordinates   1450263..1453895 (+) Length   1210 a.a.
NCBI ID   WP_085365918.1    Uniprot ID   -
Organism   Neisseria dentiae strain DSM 19151     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1445263..1458895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L92_RS06850 (H3L92_06850) purE 1445371..1445859 (-) 489 WP_085365911.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  H3L92_RS06855 (H3L92_06855) - 1445969..1446631 (-) 663 WP_085365912.1 tol-pal system YbgF family protein -
  H3L92_RS06860 (H3L92_06860) - 1446645..1447313 (-) 669 WP_085365913.1 class I SAM-dependent methyltransferase -
  H3L92_RS06865 (H3L92_06865) - 1447339..1447524 (-) 186 WP_085365914.1 DUF3460 family protein -
  H3L92_RS06870 (H3L92_06870) - 1447987..1449333 (+) 1347 WP_085365915.1 polynucleotide adenylyltransferase PcnB -
  H3L92_RS06875 (H3L92_06875) - 1449320..1449586 (+) 267 Protein_1368 glutaredoxin family protein -
  H3L92_RS06880 (H3L92_06880) - 1449847..1450116 (+) 270 WP_085365917.1 DUF1040 family protein -
  H3L92_RS06885 (H3L92_06885) recB 1450263..1453895 (+) 3633 WP_085365918.1 exodeoxyribonuclease V subunit beta Machinery gene
  H3L92_RS06890 (H3L92_06890) bfr 1454324..1454797 (-) 474 WP_085365919.1 bacterioferritin -
  H3L92_RS06895 (H3L92_06895) bfr 1454822..1455286 (-) 465 WP_085365920.1 bacterioferritin -
  H3L92_RS06900 (H3L92_06900) typA 1455729..1457540 (+) 1812 WP_085365922.1 translational GTPase TypA -
  H3L92_RS06905 (H3L92_06905) - 1457843..1458619 (+) 777 WP_174222541.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 1210 a.a.        Molecular weight: 135222.47 Da        Isoelectric Point: 6.4723

>NTDB_id=470829 H3L92_RS06885 WP_085365918.1 1450263..1453895(+) (recB) [Neisseria dentiae strain DSM 19151]
MHAQPFDPLAIAIEGTNLIEASAGTGKTYNIAALFTRLIVLEKMPVESVLVVTFTKAATAELKTRLRARLDDALSALEHG
ATSDGLQNHCRSRHPGDNFILPLLQQALRQESRERLIVRLKAAIGRFDSAAIYTIHGFCQRLLRDYAFLCQVPFDVELTD
DTRERLLVPAQDFWREKVAPYPLLAQLVFKHRQTPQTALAAVKNFTARPYLVFRRPAGDLAASHAELEQIWQEIRTALPA
LEEKFWALFATVLNGTYFRKNSYQELFATLQQAAENNRLPDVPKEAKKKEDFFNRLENLSADVLPGKLKKGKTVDTETQA
EFNKLAEFGRKLANTAQAEQDALAALYFDLLDHLAAALAERKKNRRERVFDDLLLDVYNALTTGAHAAALAQTAAANWQA
ALIDEFQDTDPLQYAVFSRLFAEQNRPLFLVGDPKQAIYSFRGADIHAYLQAARDAGKHYTLAVNHRSHGNLIRGINALF
RQKNRPFVLDHIDYADVGAARETGRLNGGGSAIQIRWLNRPDEGDNKDILRYRAAGYCADETADLLNQAASGCLNYQKHP
DEAGKPLQAGQIAVLVRTHREGQMVAAELKKRGIQSVLLSRESVFATEEAAALAALLGFWLQPHDTGPLRFVLGGVLFRQ
TAAELYDLNRNESSLLEWIASAQTAAETWQQYGIYTAVQQFAARHGIEARLLAQGNERSLTNYHQIIERLAEESEQSLSP
AALHQWLLAQIQTASEDGRSHPDSNLLRLESDENLVKIVTMHAAKGLQYPVVFCPFAWDAKPAENKHWQILHRNGQAELI
APHQPDESDRNRLADEALSENLRLLYVALTRAEERLTVYAAHCGDTPRNPLAYLLEGSADTSRIEAEAAYKIEKAALLQH
NWQRFIENAPKNTDFAFIESAPPAANYRPPTVSDGHYQAQTLPERRFETVSHTSFTGLSRQTRHSNAEEHSREELQPAID
AAETDDAPVSRPSENPPGCDIHSFARGADAGVCLHEILEQFDFSAPASGQSELVRTTLERYGFEPHWQQAVETMLDHTRL
APLGGGTLAGTPAKRRRAEMAFTLYMRDFSLRHLQQWFARPDNGLPAECAAAAQLLDFNDVKGFLNGFIDMVCLHSDGLV
TLIDYKSNHLGQTAADYHQAAMNEAMAHHHYYLQALIYAVAAARYFRSRQQPVPKIAVRYLFLRGLGGSGNGIWAWDLDT
GLLADWLENG

Nucleotide


Download         Length: 3633 bp        

>NTDB_id=470829 H3L92_RS06885 WP_085365918.1 1450263..1453895(+) (recB) [Neisseria dentiae strain DSM 19151]
ATGCACGCACAGCCGTTCGACCCCCTCGCCATCGCCATCGAAGGCACCAACCTGATTGAAGCCTCGGCCGGCACAGGCAA
AACCTACAACATCGCCGCCCTCTTCACCCGCCTGATCGTGCTCGAAAAAATGCCGGTTGAAAGCGTGCTGGTGGTAACGT
TCACCAAAGCCGCCACCGCCGAGCTGAAAACCCGCCTGCGCGCACGTTTGGACGATGCCTTATCGGCATTGGAACACGGC
GCCACTTCAGACGGCCTGCAAAACCACTGCCGCAGCCGCCACCCCGGCGACAATTTTATCCTGCCGCTGCTGCAACAGGC
CCTGCGGCAAGAAAGCCGCGAGCGGCTGATTGTGCGCCTGAAAGCCGCCATCGGCCGGTTCGACAGCGCCGCGATTTACA
CCATACACGGCTTCTGCCAGCGGCTGCTGCGCGATTATGCCTTTCTGTGCCAAGTGCCGTTCGACGTGGAACTCACCGAC
GACACCCGCGAGCGCCTGCTCGTGCCGGCGCAGGATTTCTGGCGCGAAAAAGTAGCGCCCTACCCTTTATTGGCGCAACT
GGTGTTCAAACACCGCCAAACCCCGCAAACCGCCTTGGCAGCCGTTAAAAACTTTACCGCCCGCCCCTATTTGGTTTTCA
GACGGCCTGCGGGTGATTTGGCCGCAAGCCATGCCGAATTGGAACAAATCTGGCAGGAAATCCGCACCGCCCTGCCCGCT
TTGGAAGAAAAGTTCTGGGCGCTGTTTGCAACCGTTTTAAACGGCACCTATTTCAGAAAAAATTCCTATCAAGAACTCTT
CGCCACCCTGCAACAGGCCGCAGAAAACAACCGCCTGCCCGACGTGCCGAAAGAAGCCAAGAAAAAAGAAGATTTTTTCA
ACCGCCTCGAAAACCTTTCCGCCGACGTACTGCCCGGCAAACTCAAAAAAGGCAAAACGGTGGATACCGAAACGCAGGCC
GAATTCAACAAACTGGCAGAGTTCGGCCGCAAACTGGCAAACACCGCCCAAGCCGAACAAGACGCCCTTGCCGCCCTCTA
TTTCGACCTGCTCGACCACCTCGCCGCCGCGCTGGCCGAACGCAAAAAAAACCGCCGCGAGCGCGTGTTCGACGATTTGC
TGCTCGATGTTTACAACGCCCTCACCACCGGCGCGCACGCCGCCGCGCTGGCGCAAACCGCCGCAGCCAACTGGCAGGCC
GCGCTGATAGACGAATTCCAAGACACCGACCCGCTGCAATACGCCGTTTTCAGCCGCCTGTTTGCCGAACAGAACCGCCC
GCTGTTTTTGGTGGGCGACCCCAAACAAGCCATTTACAGCTTCCGAGGCGCCGACATCCACGCCTACCTGCAAGCCGCGC
GCGATGCCGGCAAACACTACACGCTGGCGGTCAACCACCGCAGCCACGGCAACCTGATACGCGGCATCAACGCCCTTTTC
CGGCAAAAAAACCGCCCGTTCGTGCTGGATCACATCGATTATGCCGATGTTGGTGCCGCCCGCGAAACAGGCCGTCTGAA
CGGCGGCGGCAGCGCCATACAGATACGCTGGCTCAACCGCCCCGACGAGGGCGATAACAAAGACATTCTGCGCTACCGCG
CCGCCGGATACTGCGCCGACGAAACCGCCGACCTGCTCAACCAAGCCGCGTCAGGCTGCCTCAACTACCAAAAACACCCC
GATGAAGCCGGGAAACCGCTGCAAGCGGGGCAGATTGCCGTGTTGGTGCGCACCCACCGCGAAGGGCAGATGGTGGCCGC
CGAATTGAAAAAGCGCGGCATCCAAAGCGTGTTGTTAAGCCGCGAATCGGTGTTTGCCACCGAAGAAGCCGCCGCCCTCG
CCGCCCTGCTCGGCTTCTGGCTGCAACCGCACGACACCGGGCCGCTGCGCTTCGTGCTCGGCGGCGTGCTGTTCCGCCAA
ACCGCCGCCGAACTCTACGACCTCAACCGCAACGAAAGCAGCCTGCTCGAATGGATTGCATCGGCGCAAACCGCCGCCGA
AACCTGGCAGCAATACGGCATCTACACCGCCGTGCAGCAGTTTGCCGCACGCCACGGCATCGAAGCGCGGCTGCTGGCGC
AAGGCAACGAGCGCAGCCTCACCAACTACCACCAGATTATCGAGCGGCTGGCCGAAGAAAGCGAACAAAGCCTCAGCCCC
GCCGCGCTGCACCAATGGCTGCTGGCACAGATTCAGACGGCCTCAGAAGATGGCCGCAGCCACCCCGACAGCAACCTGCT
GCGGCTGGAAAGCGATGAAAATCTGGTGAAAATCGTTACCATGCACGCCGCCAAAGGCTTGCAGTATCCCGTGGTGTTCT
GCCCGTTTGCGTGGGACGCCAAACCCGCCGAAAACAAACACTGGCAGATTCTCCACCGCAACGGACAGGCCGAACTGATC
GCCCCGCACCAGCCCGACGAAAGCGACCGAAACCGCCTGGCCGACGAAGCCCTCAGCGAAAACCTGCGCCTGCTCTATGT
GGCCCTCACCCGCGCCGAAGAACGCCTAACCGTGTATGCCGCCCATTGCGGCGACACCCCCCGCAACCCGCTGGCCTACC
TGCTCGAAGGCAGCGCCGACACCAGCCGTATCGAAGCCGAAGCCGCCTACAAAATCGAAAAAGCCGCCCTGCTGCAACAC
AACTGGCAGCGTTTTATCGAAAACGCCCCGAAAAACACCGACTTTGCTTTCATAGAAAGCGCACCGCCGGCAGCAAATTA
CCGGCCGCCAACGGTTTCAGACGGCCACTATCAGGCCCAAACCCTGCCCGAGCGCCGCTTTGAAACCGTGAGCCACACCA
GCTTCACCGGCTTGAGCCGCCAAACCCGCCACAGCAACGCGGAAGAACACTCCCGCGAAGAGCTGCAACCTGCAATCGAC
GCCGCCGAAACCGACGACGCACCCGTATCCAGGCCGTCTGAAAACCCGCCCGGCTGCGATATCCACTCCTTTGCCCGCGG
CGCCGATGCCGGCGTATGCCTGCACGAAATTTTGGAACAGTTCGACTTTTCCGCACCCGCCTCCGGCCAAAGCGAACTCG
TGCGCACCACCCTCGAACGCTACGGCTTCGAGCCGCACTGGCAGCAGGCCGTCGAAACCATGCTCGACCACACCCGTCTC
GCCCCCTTGGGCGGCGGCACGCTTGCCGGCACCCCCGCCAAACGCCGCCGCGCCGAAATGGCATTCACCCTGTATATGCG
CGATTTCTCGCTCAGGCATTTGCAGCAATGGTTCGCCCGCCCCGATAACGGCCTGCCCGCCGAATGCGCAGCCGCCGCGC
AACTGTTGGATTTCAACGATGTAAAAGGTTTTTTAAACGGCTTTATCGACATGGTGTGCCTGCATTCAGACGGCCTCGTT
ACCTTAATCGACTACAAATCCAACCATCTCGGGCAAACCGCCGCCGATTACCACCAAGCAGCCATGAACGAAGCAATGGC
GCACCACCACTATTATCTGCAAGCCCTGATTTACGCCGTTGCCGCCGCCCGCTATTTCCGTTCGCGGCAACAACCCGTGC
CGAAAATCGCCGTGCGCTATCTCTTTTTGCGCGGCCTCGGCGGCAGCGGCAACGGCATCTGGGCCTGGGATCTCGATACC
GGCCTGCTGGCCGACTGGCTGGAAAACGGTTGA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(13-455)

UvrD-like helicase C-terminal domain (UvrD_C)

(460-839)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(988-1183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

56.26

100

0.564