Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   H3L92_RS04795 Genome accession   NZ_CP059570
Coordinates   1014545..1016314 (-) Length   589 a.a.
NCBI ID   WP_085364916.1    Uniprot ID   A0A1X3DG41
Organism   Neisseria dentiae strain DSM 19151     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1009545..1021314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L92_RS13585 - 1011485..1011631 (+) 147 Protein_947 IS5/IS1182 family transposase -
  H3L92_RS04780 (H3L92_04780) - 1011616..1011861 (+) 246 WP_085365625.1 hypothetical protein -
  H3L92_RS04785 (H3L92_04785) - 1012076..1012826 (-) 751 Protein_949 IS5 family transposase -
  H3L92_RS04790 (H3L92_04790) - 1013120..1014301 (-) 1182 WP_085364917.1 acetylornithine/succinyldiaminopimelate transaminase -
  H3L92_RS04795 (H3L92_04795) recD 1014545..1016314 (-) 1770 WP_085364916.1 exodeoxyribonuclease V subunit alpha Machinery gene
  H3L92_RS04800 (H3L92_04800) tpx 1016418..1016912 (-) 495 WP_085364915.1 thiol peroxidase -
  H3L92_RS04805 (H3L92_04805) - 1016937..1017551 (-) 615 WP_085364914.1 DUF4230 domain-containing protein -
  H3L92_RS04810 (H3L92_04810) - 1018610..1019365 (-) 756 WP_085364913.1 amino acid ABC transporter ATP-binding protein -
  H3L92_RS04815 (H3L92_04815) - 1019374..1020057 (-) 684 WP_158088136.1 amino acid ABC transporter permease -
  H3L92_RS04820 (H3L92_04820) - 1020080..1020919 (-) 840 WP_085364937.1 amino acid ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 63543.53 Da        Isoelectric Point: 7.5848

>NTDB_id=470824 H3L92_RS04795 WP_085364916.1 1014545..1016314(-) (recD) [Neisseria dentiae strain DSM 19151]
MPQETAADLNQAAADAAIELLQRHAPEEAATAVPYVRKLFEALSDGHAFIWLNDADVAALRQIPGVAGGSGMPLILSGKR
LFLGRVWQLERDLAQEIVRLAAAKTEPVDWMQAGQNLAQWFAGANSEGQRDAAALALRQPFILISGGPGTGKTTTVAKLL
GLLCSNGGRLPRIALAAPTGKAAAHMARALHHAAGTFGLPDTVRRHLLQLEGQTVHRLLKLRPPQMQPAFHREQPLPLDV
LVIDEASMLDLALMLQLLRAVPSGCRVILLGDENQLPSVGAGAVLAELAQETLLNTATAQELSAMLPRHGFKVSGNPPPL
SANTARLHFSHRFGDNSGIGCLARAIAAGDAENAWAQFACFPDTLGVREGSLKQQAEAFYEQQAAYWQAVVSGDVEQAFR
RQTDTVVLAAWREDAAAFNEAYRRCLHRHGLARADAPWFAGQVVMVSRNDYALDLFNGDIGLILPDPSRPGTLAAYFPAA
GGQRTVPLSRLPAHETAFAITVHKSQGSEYGEVWLLPPSAPDGSPHGLNRALLYTAVTRARERFVFWGGRTAFKTACATQ
ENRRSALREMIARETEKQVGTLVQSMPSF

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=470824 H3L92_RS04795 WP_085364916.1 1014545..1016314(-) (recD) [Neisseria dentiae strain DSM 19151]
ATGCCGCAAGAAACCGCCGCCGATTTAAACCAAGCCGCCGCCGATGCCGCGATTGAACTATTGCAGCGGCACGCACCCGA
AGAGGCCGCCACCGCCGTACCGTATGTGCGCAAACTGTTTGAAGCACTTTCAGACGGCCACGCCTTTATTTGGTTAAACG
ATGCCGACGTGGCGGCTTTGCGGCAGATTCCCGGCGTGGCGGGCGGCAGCGGTATGCCGCTGATACTCTCGGGCAAGCGG
CTGTTTCTCGGCAGAGTGTGGCAGCTTGAGCGCGACTTGGCGCAGGAAATCGTGCGCTTGGCTGCGGCAAAAACCGAACC
CGTCGACTGGATGCAGGCCGGGCAGAATCTGGCGCAATGGTTTGCCGGCGCAAACAGCGAAGGCCAGCGCGATGCCGCTG
CACTGGCTCTGCGGCAACCGTTTATCTTAATCAGCGGCGGGCCGGGCACGGGCAAAACCACCACCGTGGCCAAACTGCTT
GGGCTGTTGTGCAGCAACGGCGGCAGGCTGCCGCGCATCGCGCTGGCCGCACCCACGGGCAAGGCCGCCGCCCATATGGC
GCGGGCGCTGCACCATGCTGCCGGCACTTTCGGGCTGCCCGACACCGTTCGCCGCCACCTGCTGCAACTCGAAGGCCAAA
CCGTACACCGCCTGTTGAAACTGCGTCCGCCGCAGATGCAGCCCGCCTTCCACCGCGAACAGCCGCTGCCGCTGGACGTG
CTGGTTATCGATGAGGCTTCGATGCTCGACCTTGCCCTGATGCTGCAACTGCTGCGCGCCGTGCCTTCGGGTTGCCGCGT
TATTCTGCTGGGCGACGAAAACCAACTGCCCTCGGTGGGTGCGGGCGCGGTTTTGGCCGAACTGGCGCAAGAAACCCTGT
TAAACACGGCAACCGCGCAAGAGCTGTCGGCCATGCTGCCCCGGCACGGCTTTAAAGTTTCCGGCAACCCGCCGCCCTTG
TCGGCAAATACTGCCCGCCTGCATTTCAGCCACCGCTTCGGCGACAACAGCGGTATCGGCTGCTTGGCACGCGCCATTGC
GGCGGGAGACGCAGAAAACGCATGGGCGCAGTTCGCCTGCTTCCCCGACACGCTCGGCGTGCGCGAAGGCAGCCTCAAAC
AACAGGCCGAAGCCTTTTACGAACAACAGGCCGCTTATTGGCAGGCGGTGGTTTCTGGTGATGTTGAACAGGCATTCCGC
CGCCAAACCGACACCGTGGTGCTGGCGGCTTGGCGCGAAGATGCCGCCGCATTCAACGAAGCCTACCGCCGCTGCCTGCA
TCGGCACGGCTTGGCGCGCGCCGACGCACCGTGGTTCGCCGGGCAGGTGGTGATGGTGTCGCGCAACGATTACGCGCTCG
ATTTATTTAACGGCGACATCGGCCTGATTCTGCCCGACCCCAGCCGCCCCGGCACGCTGGCCGCCTATTTTCCCGCCGCC
GGCGGGCAGCGCACCGTGCCGTTAAGCCGCCTGCCCGCCCACGAAACCGCATTCGCCATCACCGTACACAAAAGCCAAGG
GTCGGAATACGGCGAAGTGTGGCTGCTGCCGCCTTCCGCCCCGGACGGCAGCCCGCACGGCCTTAACCGCGCCCTGCTCT
ACACCGCCGTTACCCGCGCCCGCGAAAGGTTTGTATTCTGGGGCGGCCGCACCGCTTTTAAGACGGCCTGCGCCACACAG
GAAAACCGCCGCAGCGCATTACGGGAAATGATTGCCAGAGAAACGGAAAAACAGGTCGGAACTTTGGTGCAATCCATGCC
GTCGTTTTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(497-543)

AAA domain (AAA_30)

(126-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X3DG41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

59.893

95.246

0.57