Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   H3L93_RS11865 Genome accession   NZ_CP059569
Coordinates   2201561..2203189 (-) Length   542 a.a.
NCBI ID   WP_003795857.1    Uniprot ID   C4GKH1
Organism   Kingella oralis strain DSM 18271     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2196561..2208189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L93_RS11840 (H3L93_11815) - 2196932..2197831 (-) 900 WP_003775711.1 LysR family transcriptional regulator -
  H3L93_RS11845 (H3L93_11820) - 2198011..2198976 (+) 966 WP_003795865.1 TIGR03571 family LLM class oxidoreductase -
  H3L93_RS11850 (H3L93_11825) - 2199051..2199224 (+) 174 WP_003742239.1 hypothetical protein -
  H3L93_RS11855 (H3L93_11830) - 2199228..2200055 (+) 828 WP_003795862.1 MBL fold metallo-hydrolase -
  H3L93_RS11860 (H3L93_11835) - 2200274..2201377 (+) 1104 WP_003795859.1 NADH-dependent flavin oxidoreductase -
  H3L93_RS11865 (H3L93_11840) pilA 2201561..2203189 (-) 1629 WP_003795857.1 signal recognition particle-docking protein FtsY Machinery gene
  H3L93_RS11870 (H3L93_11845) - 2203414..2203884 (+) 471 WP_003795854.1 DUF2750 domain-containing protein -
  H3L93_RS11875 (H3L93_11850) - 2204015..2205388 (+) 1374 WP_003795852.1 DUF945 family protein -
  H3L93_RS11880 (H3L93_11855) petA 2205955..2206539 (+) 585 WP_003795846.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
  H3L93_RS11885 (H3L93_11860) - 2206552..2207901 (+) 1350 WP_003795844.1 cytochrome bc complex cytochrome b subunit -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 57323.57 Da        Isoelectric Point: 4.2930

>NTDB_id=470808 H3L93_RS11865 WP_003795857.1 2201561..2203189(-) (pilA) [Kingella oralis strain DSM 18271]
MLGFFNKLFKSKTPAPETQTRPENEQNNTPTAAENVPADRTAAPATAAEPNTSDTQPENTAAETAEQTAEPVAAQATEHS
AQPEASANESASVETAEPEPAAQAQPENAEPSPAAPENETDGTTANAAAEKVAQGQPENPVTQPETEANHPTEPTQSPTQ
PESKPDALQPNPNEPPVRNWTMAAVVDKPNSWAGAAEPTQPETASAPSETQPETVASESAAAETAPVRQPETHETEPETK
PGWASRLKQGLTKSRNHMAKSLAGVFGGGQIDEDLYEELETVLLTSDMGIEATEQLMREVRDRVSLKGLKDGNELRQALK
DAVYDLLKPLEQPLAIPENGAPFVIMLAGINGAGKTTSIGKLAKYFQAQGKSVILAAGDTFRAAAREQLQEWGERNGVTV
ISQAKGDSAAVCFDAVEAAKARQIDIVLADTAGRLPTQLHLMEEIKKVKRVLQKSLPDAPHEIIVVLDANIGQNAVNQVV
AFDDALGVTGLIVTKLDGTAKGGVLAALASSRAIPVRYIGVGESIDDLRPFNAKDFVDALLD

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=470808 H3L93_RS11865 WP_003795857.1 2201561..2203189(-) (pilA) [Kingella oralis strain DSM 18271]
ATGCTAGGCTTTTTTAACAAACTGTTTAAATCAAAAACCCCGGCACCCGAAACCCAAACGCGGCCTGAAAACGAACAAAA
CAACACACCGACGGCTGCGGAAAATGTGCCCGCCGACCGCACCGCTGCCCCAGCCACGGCAGCCGAGCCCAACACAAGCG
ACACGCAGCCTGAAAACACAGCGGCCGAAACCGCAGAACAGACCGCAGAACCCGTAGCAGCGCAGGCAACAGAACACAGC
GCGCAACCCGAAGCCTCGGCAAACGAAAGCGCAAGCGTTGAAACGGCAGAACCAGAACCCGCAGCGCAAGCGCAGCCTGA
AAACGCAGAGCCGTCGCCCGCCGCCCCCGAAAATGAAACCGACGGCACAACCGCAAATGCAGCCGCTGAAAAGGTGGCAC
AAGGGCAGCCTGAAAACCCTGTCACGCAGCCTGAAACCGAAGCCAACCACCCAACCGAGCCAACCCAATCCCCAACGCAG
CCCGAATCCAAACCCGACGCGTTGCAACCCAACCCAAACGAACCGCCCGTTCGCAACTGGACGATGGCCGCCGTTGTCGA
CAAGCCCAACAGCTGGGCAGGCGCGGCCGAGCCAACGCAGCCCGAAACCGCATCAGCACCAAGCGAAACGCAGCCTGAAA
CCGTTGCAAGCGAATCAGCCGCCGCCGAAACCGCACCCGTTCGGCAGCCTGAAACACACGAAACCGAACCTGAAACCAAG
CCCGGCTGGGCAAGCCGTTTGAAGCAAGGCCTGACCAAATCGCGCAACCACATGGCCAAATCGCTGGCAGGCGTGTTCGG
CGGCGGGCAGATAGACGAAGACTTGTACGAAGAGCTGGAAACCGTGCTGCTCACCAGCGACATGGGCATTGAAGCCACCG
AGCAGCTGATGCGCGAAGTGCGCGACCGCGTGTCGCTCAAAGGGCTCAAAGACGGCAACGAATTGCGCCAAGCCCTGAAA
GACGCGGTGTACGACCTGCTCAAACCGCTGGAACAGCCGCTCGCCATCCCCGAAAACGGCGCGCCGTTTGTGATTATGCT
GGCGGGCATCAACGGCGCGGGCAAAACCACCTCCATCGGCAAGCTCGCCAAATATTTCCAAGCGCAGGGCAAATCGGTGA
TTCTGGCGGCGGGCGACACCTTCCGCGCCGCCGCCCGCGAGCAGCTGCAAGAATGGGGCGAACGCAACGGCGTTACCGTG
ATTTCGCAAGCCAAAGGCGACAGCGCGGCGGTGTGTTTTGACGCGGTGGAAGCCGCCAAGGCGCGCCAAATCGACATCGT
GCTTGCCGACACCGCAGGGCGGCTGCCCACGCAGTTGCACCTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGTTGCAAA
AATCCTTGCCCGATGCGCCGCATGAAATCATTGTGGTGCTGGATGCCAACATCGGGCAAAACGCGGTGAACCAAGTGGTC
GCTTTTGACGACGCGCTGGGCGTAACCGGCTTAATCGTAACCAAGCTGGACGGCACAGCCAAAGGCGGCGTGCTGGCGGC
GCTGGCAAGCAGCCGCGCCATCCCCGTGCGCTATATCGGCGTGGGCGAAAGCATCGACGATTTGCGCCCGTTTAACGCCA
AAGATTTTGTGGACGCGCTGCTGGATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(342-541)

SRP54-type protein, helical bundle domain (SRP54_N)

(260-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C4GKH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

77.528

65.683

0.509