Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   H3L93_RS04010 Genome accession   NZ_CP059569
Coordinates   752656..753114 (+) Length   152 a.a.
NCBI ID   WP_040558871.1    Uniprot ID   -
Organism   Kingella oralis strain DSM 18271     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 747656..758114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L93_RS04000 (H3L93_03990) - 751170..751532 (+) 363 WP_003796620.1 RidA family protein -
  H3L93_RS04005 (H3L93_03995) - 751600..752298 (+) 699 WP_003796618.1 phosphoglycolate phosphatase -
  H3L93_RS04010 (H3L93_04000) recX 752656..753114 (+) 459 WP_040558871.1 recombination regulator RecX Regulator
  H3L93_RS04015 (H3L93_04005) - 753245..753703 (+) 459 WP_155803149.1 hypothetical protein -
  H3L93_RS04020 (H3L93_04010) - 753607..754524 (-) 918 WP_003796610.1 pseudouridine synthase -
  H3L93_RS04025 (H3L93_04015) hisS 754624..755919 (+) 1296 WP_003796607.1 histidine--tRNA ligase -
  H3L93_RS04030 (H3L93_04020) - 755904..756515 (+) 612 WP_003796604.1 tetratricopeptide repeat protein -
  H3L93_RS04035 (H3L93_04025) - 756592..757554 (-) 963 WP_003796603.1 tRNA-dihydrouridine synthase -
  H3L93_RS04040 (H3L93_04030) - 757563..757976 (+) 414 Protein_796 aspartate carbamoyltransferase -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17649.74 Da        Isoelectric Point: 8.4119

>NTDB_id=470792 H3L93_RS04010 WP_040558871.1 752656..753114(+) (recX) [Kingella oralis strain DSM 18271]
MRPTKSLRARALDILSRREVSRQQLYRKLAPYAEDPDELEAVLAEFARRNWQSDERYTEAYIHSKSQKHGTQRLKQALAA
QGIDEALIREHLPDARVEQAHANQVLRKKYPAPPADYAEKQKQLRFLVYRGFDLDTANHAVKHAWDDGDADE

Nucleotide


Download         Length: 459 bp        

>NTDB_id=470792 H3L93_RS04010 WP_040558871.1 752656..753114(+) (recX) [Kingella oralis strain DSM 18271]
ATGCGACCCACCAAATCCCTACGCGCCCGCGCCCTAGACATCCTCTCCCGCCGCGAAGTGAGCCGCCAACAGCTCTACCG
CAAACTCGCCCCCTACGCTGAAGACCCCGACGAGTTAGAAGCCGTGCTCGCCGAATTTGCCCGGCGCAACTGGCAATCCG
ACGAACGCTACACCGAAGCCTACATCCACAGCAAAAGCCAAAAACACGGCACGCAACGGCTCAAACAAGCCCTTGCCGCG
CAAGGCATCGACGAAGCGCTTATCCGCGAACACCTGCCCGATGCCCGCGTCGAGCAAGCGCATGCCAACCAAGTGCTGCG
CAAAAAATACCCCGCGCCGCCCGCCGATTACGCCGAAAAACAAAAGCAACTGCGCTTTCTGGTCTATCGCGGCTTTGATT
TGGACACCGCCAACCATGCCGTGAAACACGCGTGGGATGACGGGGATGCAGACGAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(35-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

66.216

97.368

0.645