Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HP2018_RS00095 Genome accession   NC_017381
Coordinates   14164..14427 (+) Length   87 a.a.
NCBI ID   WP_000584948.1    Uniprot ID   A0AB72ZTB6
Organism   Helicobacter pylori 2018     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 9164..19427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP2018_RS00070 (hp2018_0014) groES 9446..9802 (-) 357 WP_000671927.1 co-chaperone GroES -
  HP2018_RS00075 (hp2018_0015) dnaG 10089..11768 (+) 1680 WP_000601516.1 DNA primase -
  HP2018_RS00080 (hp2018_0016) - 11765..12817 (+) 1053 WP_000809444.1 MnmA/TRMU family protein -
  HP2018_RS00085 (hp2018_0017) - 12910..13737 (+) 828 WP_001154977.1 DUF5718 family protein -
  HP2018_RS00090 (hp2018_0018) comB2 13883..14164 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HP2018_RS00095 (hp2018_0019) comB3 14164..14427 (+) 264 WP_000584948.1 hypothetical protein Machinery gene
  HP2018_RS00100 (hp2018_0020) comB4 14429..16792 (+) 2364 WP_000890239.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HP2018_RS00105 (hp2018_0022) - 17097..18437 (+) 1341 WP_001938079.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9992.05 Da        Isoelectric Point: 9.5290

>NTDB_id=47079 HP2018_RS00095 WP_000584948.1 14164..14427(+) (comB3) [Helicobacter pylori 2018]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSALEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=47079 HP2018_RS00095 WP_000584948.1 14164..14427(+) (comB3) [Helicobacter pylori 2018]
ATGATTATCCTATCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAGTTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGCGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTATCGCTAAAAGCAAAATAAAGACT
AAAACCAAATGCTACAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977

Multiple sequence alignment