Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HP2018_RS00090 Genome accession   NC_017381
Coordinates   13883..14164 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori 2018     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8883..19164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP2018_RS00070 (hp2018_0014) groES 9446..9802 (-) 357 WP_000671927.1 co-chaperone GroES -
  HP2018_RS00075 (hp2018_0015) dnaG 10089..11768 (+) 1680 WP_000601516.1 DNA primase -
  HP2018_RS00080 (hp2018_0016) - 11765..12817 (+) 1053 WP_000809444.1 MnmA/TRMU family protein -
  HP2018_RS00085 (hp2018_0017) - 12910..13737 (+) 828 WP_001154977.1 DUF5718 family protein -
  HP2018_RS00090 (hp2018_0018) comB2 13883..14164 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HP2018_RS00095 (hp2018_0019) comB3 14164..14427 (+) 264 WP_000584948.1 hypothetical protein Machinery gene
  HP2018_RS00100 (hp2018_0020) comB4 14429..16792 (+) 2364 WP_000890239.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HP2018_RS00105 (hp2018_0022) - 17097..18437 (+) 1341 WP_001938079.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=47078 HP2018_RS00090 WP_001272690.1 13883..14164(+) (comB2) [Helicobacter pylori 2018]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=47078 HP2018_RS00090 WP_001272690.1 13883..14164(+) (comB2) [Helicobacter pylori 2018]
ATGTCCGCTCATTTTTTGAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCCATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATCTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment