Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   H3L95_RS12605 Genome accession   NZ_CP059566
Coordinates   2658372..2660414 (+) Length   680 a.a.
NCBI ID   WP_128887903.1    Uniprot ID   -
Organism   Neisseria sicca strain DSM 17713     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2653372..2665414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS13690 - 2653426..2653488 (-) 63 Protein_2450 transposase -
  H3L95_RS12585 (H3L95_12585) - 2653498..2655768 (-) 2271 WP_003757180.1 Tex family protein -
  H3L95_RS12590 (H3L95_12590) - 2655882..2656442 (-) 561 WP_128887904.1 hypothetical protein -
  H3L95_RS12595 (H3L95_12595) - 2656506..2657483 (-) 978 WP_003757178.1 virulence RhuM family protein -
  H3L95_RS12600 (H3L95_12600) - 2657532..2658242 (-) 711 WP_003757177.1 SMI1/KNR4 family protein -
  H3L95_RS12605 (H3L95_12605) recG 2658372..2660414 (+) 2043 WP_128887903.1 ATP-dependent DNA helicase RecG Machinery gene
  H3L95_RS12610 (H3L95_12610) - 2660657..2662063 (-) 1407 WP_003757174.1 DEAD/DEAH box helicase -
  H3L95_RS12615 (H3L95_12615) - 2662062..2662229 (+) 168 WP_003757175.1 hypothetical protein -
  H3L95_RS12620 (H3L95_12620) - 2662523..2662771 (+) 249 WP_003757173.1 hypothetical protein -
  H3L95_RS12625 (H3L95_12625) - 2662957..2663598 (-) 642 WP_040668233.1 GrxB family glutaredoxin -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 75109.99 Da        Isoelectric Point: 7.0652

>NTDB_id=470753 H3L95_RS12605 WP_128887903.1 2658372..2660414(+) (recG) [Neisseria sicca strain DSM 17713]
MMTPETQKQLKITDVSAKKLDKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQI
ADGSGSVLFLRFIHFYASHQKQMAAGKRIRAVGEIKHGFYGDEMIHPKIRDAEGSGLAESLTPVYPTVNGLNQPTLRRII
QTALDVTPLHDTLPDALLGRLKLPHLAESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTA
AALGGDGTLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQAAVMAPTEI
LAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGTVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRL
ALKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLI
EESETLQLQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAQFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERM
GLAQLHQLRGRVGRGAAESVCILLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEE
DLHLLEQAREIAPMLIEQNPEIVEAHLARWLASREGYLGV

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=470753 H3L95_RS12605 WP_128887903.1 2658372..2660414(+) (recG) [Neisseria sicca strain DSM 17713]
ATGATGACGCCCGAAACCCAGAAACAGCTCAAAATCACCGACGTTTCCGCTAAGAAACTCGACAAACTCAACCTCCATAC
CGCATGGGATTTGGTTTTGCATTTGCCGCTGCGTTACGAGGATGAGACGCACATCATGCCGATTAAGGATGCGCCGATCG
GCGTGCCGTGTCAGGTTGAGGGCGAGGTCATCCATCAGGAAGTAACGTTCAAACCGCGCAAGCAGCTGATTGTCCAAATC
GCCGACGGTTCCGGCAGCGTCCTTTTTCTGCGCTTCATCCACTTTTACGCCAGCCATCAGAAACAGATGGCGGCCGGCAA
ACGCATCCGCGCCGTGGGTGAAATCAAACACGGATTTTACGGCGATGAGATGATTCATCCCAAAATCCGCGATGCCGAGG
GCAGCGGTTTGGCGGAAAGCCTCACGCCCGTTTATCCGACCGTAAACGGTTTGAACCAGCCCACTTTGCGCCGCATCATT
CAGACGGCGTTGGACGTTACGCCGCTGCACGACACGCTGCCCGATGCCTTATTGGGTCGTCTGAAACTGCCGCACCTCGC
CGAAAGCCTGCGCCTTTTGCATTCGCCGCCGCCGAGCTTTACCATCCACCAGCTTTCCGACGGCGCGCTGCCCGCATGGC
AGCGGCTCAAATTCGACGAACTTTTGGCGCAACAGCTTTCCATGCGCTTGGCGCGGCAGAAGCGCGTCAGCGGTACGGCG
GCGGCATTGGGCGGCGACGGCACATTGACCCAAGCCCTGCGCCACGCCTTGCCGTTTGCCCTGACCGATGCACAAGAAAG
GGTCGTGTCCGAAATCCGCCGCGATATGGCGCAAACCCACCCGATGCACCGCCTGCTGCAAGGCGATGTCGGCAGCGGCA
AAACCATCGTCGCCGCCTTGTCCGCGCTGACCGCCATCGAATCCGGCGCGCAGGCGGCCGTGATGGCGCCGACCGAAATC
CTTGCCGAACAGCATTTCATCAAGTTCAAACAATGGCTTGAGCCGTTGGGTCTCGAAGTCGTCTGGCTTTCCGGCAGCCA
GCGCAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTCGCCGACGGTACCGTCAAAATCGCCGTCGGCACACACGCCCTGT
TTTCAGACGACGTCGAGTTTCAAAATCTGGGCTTGGTGATTGTGGACGAACAACACCGCTTCGGCGTCGCCCAACGCCTC
GCCCTTAAAAACAAAGGGCGCGACGTCCACCAGCTGATGATGTCCGCCACGCCCATCCCGCGCACGCTCGCCATGAGTTT
CTTCGCCGACTTGGACGTGTCCGTCATCGACGAGTTGCCGCCCGGGCGCACCCCGATTAAAACCCGCCTCGTCAACAACG
TCCGTCGCGCCGAAGTCGAAGGCTTCGTCCTCAACATCTGCCGCAAAGGGCAGCAGGCATACTGGGTCTGCCCGCTGATT
GAAGAAAGCGAAACCCTGCAACTGCAAACCGCTACCGAAACCCTCGAGCAGCTTCAGGCAGCCTTGCCCGAACTCAACAT
CGGCTTGGTACACGGGCGCATGAAAGCCGCCGAAAAAGCCGAAGTCATGGCTCAGTTTGCCGCAGGCCGTCTGAACGTCT
TGGTCGCCACCACCGTCATCGAAGTCGGCGTAGATGTGCCCAACGCCGCCCTGATGGTGATCGAACACGCCGAACGCATG
GGCTTGGCGCAGCTGCACCAATTACGCGGGCGGGTAGGGCGCGGCGCGGCAGAAAGCGTGTGCATCCTCCTGTTTGCCGA
ACCCTTGAGCGAACTCGCCAAAGCGCGGCTGAAAGTTATCTACGAACACACCGACGGCTTCGAAATCGCCCGCCAAGACC
TCAATATCCGCGGCCCCGGCGAATTTCTCGGCGCGCGCCAAAGCGGCGTCCCCATGCTGCGCTTCGCCAACCTCGAAGAA
GACCTGCACCTCTTGGAACAAGCGCGCGAAATCGCTCCGATGCTGATTGAACAAAACCCCGAAATCGTCGAAGCGCATCT
GGCAAGGTGGCTTGCCAGCAGGGAAGGGTATTTGGGCGTGTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(468-575)

DEAD/DEAH box helicase (DEAD)

(262-419)

RecG wedge domain (RecG_wedge)

(15-164)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(604-666)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

93.971

100

0.94