Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   H3L95_RS12350 Genome accession   NZ_CP059566
Coordinates   2594735..2595967 (+) Length   410 a.a.
NCBI ID   WP_003761517.1    Uniprot ID   C6M9T7
Organism   Neisseria sicca strain DSM 17713     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 2589735..2600967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS12315 (H3L95_12315) rsmA 2589744..2590523 (+) 780 WP_003761535.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  H3L95_RS12320 (H3L95_12320) - 2590540..2591211 (+) 672 WP_070498712.1 sel1 repeat family protein -
  H3L95_RS12325 (H3L95_12325) - 2591214..2591942 (+) 729 WP_003740819.1 amino acid ABC transporter ATP-binding protein -
  H3L95_RS12330 (H3L95_12330) - 2592038..2592529 (+) 492 WP_003761530.1 MepB family protein -
  H3L95_RS12335 (H3L95_12335) - 2592516..2592875 (+) 360 WP_003761526.1 hypothetical protein -
  H3L95_RS12340 (H3L95_12340) - 2592880..2593314 (+) 435 WP_003761524.1 protein YgfX -
  H3L95_RS12345 (H3L95_12345) folC 2593448..2594722 (+) 1275 WP_070865786.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  H3L95_RS12350 (H3L95_12350) tpc 2594735..2595967 (+) 1233 WP_003761517.1 SPOR domain-containing protein Machinery gene
  H3L95_RS12355 (H3L95_12355) - 2595960..2596466 (+) 507 WP_003761516.1 CvpA family protein -
  H3L95_RS12360 (H3L95_12360) purF 2596812..2598356 (+) 1545 WP_040669082.1 amidophosphoribosyltransferase -
  H3L95_RS12370 (H3L95_12370) greB 2598648..2599139 (+) 492 WP_003761510.1 transcription elongation factor GreB -
  H3L95_RS12375 (H3L95_12375) - 2599434..2600225 (+) 792 WP_003761506.1 formate/nitrite transporter family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44125.32 Da        Isoelectric Point: 9.7653

>NTDB_id=470752 H3L95_RS12350 WP_003761517.1 2594735..2595967(+) (tpc) [Neisseria sicca strain DSM 17713]
MSDNKQNEVLTGYEQLKRRNRRRLVMASGLVAASTVLLGVALSTGPENKPEENAQTTTIQQNNANAEPANLADATVLEPS
TKEDLEAAAEAAKNADAEVADKPQETAAPEQTAHAQAEPQPDAPPAAPEDVGPPLVLINDTLSDSDIKGLEESEKIQKAE
AAKREAAERRAEERRRNREEQRKAQQLQAQEAAEREANAAARKRALQAAKAEKAERAAAAERNKLAQLEKAEKAVAERKA
LKAKEEAAAKHKAAAEKAKETVTASASEPKERIRVDASKYEKIETAGKKASAVREAEAKVAKAKAEQTAKAEKTATATAE
RSSEKAKTKTAEVKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEVMTDKGKVYRVKSGAYKNAYDAERDLNKLRV
HGIAGQVTNE

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=470752 H3L95_RS12350 WP_003761517.1 2594735..2595967(+) (tpc) [Neisseria sicca strain DSM 17713]
ATGTCTGACAATAAGCAAAATGAAGTTTTGACCGGTTACGAACAGCTCAAACGCCGCAACCGCCGCCGCTTGGTTATGGC
ATCGGGGTTGGTGGCGGCATCGACCGTTTTATTGGGCGTCGCCCTGTCAACCGGACCGGAAAACAAGCCAGAAGAAAACG
CCCAAACTACAACCATCCAACAAAACAACGCCAACGCAGAACCTGCCAACTTGGCGGATGCGACCGTGTTGGAGCCTTCT
ACCAAAGAAGATTTGGAAGCAGCGGCGGAAGCGGCTAAAAATGCCGATGCCGAAGTAGCGGACAAACCGCAGGAAACCGC
CGCGCCGGAGCAAACTGCGCATGCGCAAGCCGAGCCGCAACCTGATGCGCCGCCAGCCGCGCCCGAAGATGTAGGCCCGC
CTTTGGTGCTGATTAACGATACGCTGTCAGACAGCGACATCAAAGGTTTGGAAGAGTCTGAGAAAATCCAAAAAGCCGAA
GCCGCCAAACGCGAAGCAGCCGAGCGCCGCGCGGAAGAGCGCCGCCGTAATCGTGAAGAGCAGCGTAAAGCGCAGCAGCT
TCAAGCCCAGGAAGCAGCGGAACGCGAAGCCAATGCCGCAGCGCGTAAACGCGCCCTTCAAGCTGCCAAAGCCGAGAAGG
CCGAGCGTGCCGCCGCAGCCGAACGCAACAAGCTGGCACAGTTGGAAAAAGCCGAGAAAGCCGTTGCCGAACGTAAGGCA
TTAAAAGCCAAAGAAGAAGCGGCGGCGAAACACAAAGCGGCAGCGGAAAAAGCCAAAGAAACCGTCACAGCATCCGCATC
CGAACCTAAAGAAAGAATTCGGGTAGATGCTTCCAAATATGAAAAAATCGAAACAGCCGGCAAAAAAGCTTCCGCAGTAA
GGGAAGCCGAAGCGAAAGTTGCCAAAGCCAAAGCCGAGCAGACGGCCAAGGCAGAGAAAACCGCTACCGCTACTGCCGAA
AGGTCGTCTGAAAAGGCAAAAACCAAAACCGCCGAAGTCAAATCAGGTAAAAAAGCCGCCATTCAGGCAGGTTATGCTGA
AAAAGAACGCGCCTTGAGCCTGCAACGCAAAATGAAAGCAGCAGGTATCGACTCAACCATTACCGAAGTGATGACGGATA
AAGGCAAGGTTTACCGCGTCAAATCGGGCGCATACAAAAACGCCTACGATGCCGAACGCGACTTGAACAAACTGCGCGTA
CACGGCATTGCCGGACAGGTAACCAATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C6M9T7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

49.029

100

0.493