Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HPPN135_RS07285 Genome accession   NC_017379
Coordinates   1504623..1505198 (-) Length   191 a.a.
NCBI ID   WP_001203573.1    Uniprot ID   -
Organism   Helicobacter pylori Puno135     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1499623..1510198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPN135_RS08355 (HPPN135_07440) - 1501312..1501890 (-) 579 WP_042357320.1 restriction endonuclease -
  HPPN135_RS08360 (HPPN135_07445) - 1501879..1502555 (-) 677 Protein_1411 restriction endonuclease subunit S -
  HPPN135_RS07280 (HPPN135_07450) - 1502552..1504591 (-) 2040 WP_001147670.1 class I SAM-dependent DNA methyltransferase -
  HPPN135_RS07285 (HPPN135_07455) comFC 1504623..1505198 (-) 576 WP_001203573.1 ComF family protein Machinery gene
  HPPN135_RS07290 (HPPN135_07460) tmk 1505186..1505761 (-) 576 WP_000289687.1 dTMP kinase -
  HPPN135_RS07295 (HPPN135_07465) coaD 1505763..1506236 (-) 474 WP_001169229.1 pantetheine-phosphate adenylyltransferase -
  HPPN135_RS07300 (HPPN135_07470) - 1506236..1506799 (-) 564 WP_000780111.1 UbiX family flavin prenyltransferase -
  HPPN135_RS07305 (HPPN135_07480) flgA 1506809..1507465 (-) 657 WP_000697670.1 flagellar basal body P-ring formation chaperone FlgA -
  HPPN135_RS07310 (HPPN135_07485) uvrD 1507462..1509507 (-) 2046 WP_000345156.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21293.91 Da        Isoelectric Point: 9.4455

>NTDB_id=47075 HPPN135_RS07285 WP_001203573.1 1504623..1505198(-) (comFC) [Helicobacter pylori Puno135]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRVSNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNTKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=47075 HPPN135_RS07285 WP_001203573.1 1504623..1505198(-) (comFC) [Helicobacter pylori Puno135]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGTTTCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGTGCCAATAACCCACGGAATTTCACCTTCAAGGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACCAAAGCGCACTTTGCGATCGCTCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

95.288

100

0.953

Multiple sequence alignment