Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   H3L95_RS05875 Genome accession   NZ_CP059566
Coordinates   1205995..1209636 (+) Length   1213 a.a.
NCBI ID   WP_003760084.1    Uniprot ID   -
Organism   Neisseria sicca strain DSM 17713     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1200995..1214636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS05855 (H3L95_05855) - 1202211..1202477 (-) 267 WP_003760069.1 hypothetical protein -
  H3L95_RS05860 (H3L95_05860) yhbY 1202682..1202966 (-) 285 WP_003760073.1 ribosome assembly RNA-binding protein YhbY -
  H3L95_RS05865 (H3L95_05865) - 1203075..1203695 (+) 621 WP_003762741.1 RlmE family RNA methyltransferase -
  H3L95_RS05870 (H3L95_05870) ftsH 1203760..1205772 (+) 2013 WP_182096235.1 ATP-dependent zinc metalloprotease FtsH -
  H3L95_RS05875 (H3L95_05875) recB 1205995..1209636 (+) 3642 WP_003760084.1 exodeoxyribonuclease V subunit beta Machinery gene
  H3L95_RS05880 (H3L95_05880) - 1209831..1210049 (-) 219 WP_003760086.1 YdcH family protein -
  H3L95_RS05885 (H3L95_05885) tssH 1210637..1213456 (-) 2820 WP_040668831.1 type VI secretion system ATPase TssH -
  H3L95_RS05890 (H3L95_05890) - 1213528..1214016 (-) 489 WP_003760091.1 Hcp family type VI secretion system effector -

Sequence

Protein


Download         Length: 1213 a.a.        Molecular weight: 136457.32 Da        Isoelectric Point: 4.9500

>NTDB_id=470731 H3L95_RS05875 WP_003760084.1 1205995..1209636(+) (recB) [Neisseria sicca strain DSM 17713]
MPANASIPAFDPLSIPIAGTNLIEASAGTGKTYGIAALFTRLVVLEQMPVESILTVTFTKAATAELKTRLRARLDEVLHA
LESVEDTDNLSDDLEAYCRDNHPGDVFLTGLLKQALAQESRARLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCHA
PMDVELTEDNRDRLLIPAQDFWRDRIVNHPVLAKLVFQRRQTPQTMLAAIQKFVSRPYLVFRRPEADLIAAQENFRKTWE
KVRSKLDALEETFWRIRPILNGQSYQEKTFKTVFLELQSASQSDALPSFGKTTAEKLPMFAVEALASKVKKGNTPDAAAF
ADLQILANLGADSAAIAQAEEETLTLLHLDLLDHLNASLSEQKKSKRERGFDDLLLDVYDALTDNPQADSLAQAVAQNWR
IALIDEFQDTDPLQYEIFRKIFISQNKPLFLVGDPKQAIYSFRGADIYAYLQAAADAQHSYTLATNYRSHAKLINGIGAL
FRCKNRPFVLDGIDYTEVGAARSESRLSPPQTAIQIRWLNGKDDEVLNKDILRRRASEYCADEIAHTLNEAAEGRLKFKG
RPVVSGDIAVLVRTFNEGVMVAKALKTRGIQSVLLSRESVFTTPEALALAALLDYWLNPGQIGSLRFVLSGTLFGYDAQA
LYQLNRNEAELLNWINTSAESVAIWRKSGIYAALQHFSSLHGIETGLLARGDERGLTNFHQLLECLSEEEGQSLSRAALH
QWLNEQISLAQDRSVGESGLLRLESDEALVKIVTMHASKGLQYPLVYCPFVWDAKDMKPADWQILHTADHTTELLAKSQL
NEEDCIHLADEEMAERLRLLYVALTRAEEQLILYAAHCGDTADSPFAYLLEGSADSNRADTRQAYDQERKANKALGELQM
LKNNWLRFLNNPPEHTDFSFSEDAPQPAAAQNRHLSDDLYQAAVIPARGFQFIRHTSFTGLSRQVKTRDDEREELQPALD
PAETAAETERSSETALSVSDDLPNADIHHFPRGANAGVCLHEMLEKFDFAQSAENQSNLIAETLTRYGFDLLWTDAVKQI
LDTCRKTRLAAQSLSEIPPERRLPEMGFTLYTEDFKLHDLRRWFARENSSLPPECIEAAERLDFQDVQGFLNGFIDMVCQ
DLDDLVCIIDYKSNHLGDSAEAYTQQAMNEAVEDHHYYLQALIYAIAVARYFKLRGKPLPKIAIRYLFLRGLDGTDNGVW
QWDLDTESLAQWL

Nucleotide


Download         Length: 3642 bp        

>NTDB_id=470731 H3L95_RS05875 WP_003760084.1 1205995..1209636(+) (recB) [Neisseria sicca strain DSM 17713]
ATGCCCGCCAACGCCTCCATTCCAGCCTTCGATCCCCTAAGCATCCCCATAGCAGGTACCAATCTGATTGAAGCCTCTGC
CGGCACGGGCAAAACCTACGGCATTGCGGCTTTGTTCACACGTTTGGTCGTGCTTGAACAGATGCCGGTCGAAAGCATTT
TGACCGTTACTTTTACCAAGGCGGCGACAGCGGAATTGAAAACCCGTTTGCGCGCACGTTTGGACGAAGTATTGCATGCT
TTGGAGAGCGTGGAGGATACGGACAATCTTTCAGACGATCTTGAAGCATATTGCCGAGACAATCATCCGGGCGATGTGTT
TCTGACCGGTTTGCTCAAACAGGCATTGGCTCAAGAAAGTCGGGCGCGGCTGATTGTCCGCCTCAAGGCTGCCATCGGGC
AATTCGACAACGCCGCGATTTATACCATTCACGGCTTCTGCCAACGCATTTTGCGCGATTATGCGTTTTTGTGCCACGCG
CCTATGGATGTCGAGTTGACCGAAGACAACCGCGACCGCCTGCTGATTCCCGCTCAAGATTTTTGGCGCGACCGCATCGT
CAATCATCCCGTTTTGGCGAAGCTGGTATTTCAACGCCGCCAAACGCCGCAAACCATGCTGGCGGCAATACAAAAGTTCG
TCAGCCGTCCGTATTTGGTTTTCAGACGACCCGAAGCAGACTTAATCGCCGCACAGGAAAACTTTCGGAAAACATGGGAA
AAAGTGCGTTCCAAACTGGACGCTTTGGAAGAAACATTCTGGCGCATCCGTCCGATATTAAACGGGCAATCCTATCAAGA
AAAAACATTCAAGACCGTCTTTCTCGAACTCCAATCCGCCTCCCAATCCGATGCCCTTCCTTCTTTTGGCAAGACGACGG
CAGAAAAGCTGCCCATGTTTGCCGTAGAAGCTTTAGCGTCCAAAGTCAAAAAAGGCAATACTCCCGATGCTGCCGCCTTT
GCCGATTTGCAGATATTGGCGAATCTCGGCGCGGATTCGGCTGCCATCGCGCAAGCCGAAGAAGAGACGCTTACCCTGCT
CCACCTCGACCTGCTCGACCATCTTAACGCCAGCCTGAGCGAACAGAAAAAATCCAAGCGCGAACGCGGTTTCGACGATT
TGCTGCTTGATGTTTATGACGCATTAACCGACAACCCGCAGGCCGACTCACTGGCTCAGGCGGTAGCGCAAAACTGGCGC
ATCGCCTTGATTGACGAATTTCAAGACACCGACCCGTTACAATACGAGATTTTCCGAAAAATCTTCATCAGCCAAAACAA
GCCTTTATTCTTAGTCGGCGACCCGAAACAAGCCATTTACAGCTTTCGCGGCGCCGACATTTACGCCTATCTGCAAGCCG
CCGCCGACGCGCAACACAGCTACACGCTGGCGACCAATTACCGCAGCCATGCCAAGCTGATTAACGGCATAGGCGCATTG
TTCCGCTGCAAAAACCGCCCTTTCGTCTTGGACGGCATAGACTATACCGAAGTCGGCGCCGCACGTTCCGAAAGCCGGCT
TTCGCCGCCCCAAACCGCCATACAGATACGCTGGCTCAACGGCAAAGACGACGAAGTGCTCAACAAAGACATCTTGCGCC
GCCGTGCCTCCGAATATTGCGCCGACGAAATCGCCCACACGCTCAACGAAGCTGCCGAAGGTCGTCTGAAATTCAAAGGC
AGACCGGTCGTTTCGGGCGACATTGCCGTCTTGGTCAGGACGTTTAACGAAGGCGTGATGGTGGCAAAAGCATTGAAAAC
GCGCGGCATACAAAGCGTTTTGCTGTCGCGAGAGTCGGTTTTCACCACGCCGGAAGCCCTCGCCCTTGCCGCGCTTTTAG
ATTATTGGCTCAATCCCGGACAAATCGGCTCGCTGCGCTTTGTCTTATCCGGCACATTGTTCGGCTACGACGCGCAAGCC
CTGTATCAACTCAACCGCAACGAAGCCGAATTATTAAACTGGATAAACACCTCCGCCGAATCCGTTGCCATTTGGCGGAA
AAGCGGGATTTATGCCGCGCTGCAACACTTCTCCTCGTTGCACGGCATCGAAACCGGATTACTTGCACGCGGCGACGAGC
GCGGCCTCACCAATTTCCATCAGCTTTTAGAGTGCCTCTCCGAAGAAGAGGGACAAAGCCTCAGCCGCGCCGCCCTACAT
CAATGGCTCAACGAGCAAATCAGCCTGGCGCAAGACCGCTCTGTCGGCGAATCAGGACTGTTACGGCTTGAAAGCGACGA
AGCACTGGTCAAAATCGTTACCATGCATGCCTCCAAAGGTTTGCAATATCCTTTGGTCTATTGCCCTTTCGTTTGGGACG
CGAAAGACATGAAGCCCGCCGATTGGCAAATCCTCCACACCGCCGACCACACCACGGAACTGCTTGCCAAATCGCAACTC
AACGAAGAAGACTGCATCCACCTTGCCGACGAAGAAATGGCGGAACGCCTGCGCCTGCTGTACGTCGCGCTGACCCGTGC
CGAAGAGCAGCTCATCCTTTATGCCGCCCATTGCGGCGATACCGCCGATTCCCCTTTTGCCTACCTGCTTGAAGGCAGCG
CCGACAGCAATCGGGCGGATACCCGTCAGGCCTATGACCAAGAACGCAAAGCAAACAAAGCCCTAGGCGAGCTGCAAATG
CTGAAAAACAACTGGCTGCGTTTCCTCAACAATCCCCCCGAACATACCGACTTCAGCTTTTCCGAAGACGCGCCGCAACC
TGCTGCCGCGCAAAACCGCCATCTTTCAGACGACCTCTATCAAGCCGCCGTTATCCCTGCACGCGGATTTCAGTTCATCC
GGCATACCAGCTTTACCGGCCTCAGCCGCCAAGTCAAAACCCGAGACGACGAACGCGAAGAATTACAACCCGCACTCGAT
CCCGCAGAAACCGCCGCCGAAACAGAAAGGTCGTCTGAAACCGCCCTCTCCGTTTCAGACGACCTCCCAAATGCCGACAT
CCACCATTTCCCGCGCGGCGCCAACGCCGGCGTCTGCCTGCATGAAATGTTGGAAAAATTCGACTTTGCCCAAAGCGCCG
AAAATCAAAGCAACCTGATAGCCGAAACCTTGACCCGCTACGGCTTCGACCTGCTTTGGACAGATGCCGTCAAACAAATA
CTCGACACCTGCCGCAAAACGCGCCTTGCTGCACAAAGCCTGTCTGAAATCCCACCCGAACGCCGCCTTCCGGAAATGGG
ATTTACCCTCTACACCGAAGACTTCAAACTCCATGACCTGCGCCGCTGGTTTGCCCGCGAAAACAGTTCCCTGCCGCCGG
AATGTATCGAAGCCGCAGAAAGATTGGATTTCCAAGATGTACAAGGTTTTCTCAATGGCTTCATCGACATGGTCTGCCAA
GATTTAGACGACCTCGTATGCATCATCGACTACAAATCCAACCATCTGGGCGACAGCGCCGAAGCCTATACGCAACAAGC
CATGAACGAAGCCGTAGAAGACCACCACTACTACCTGCAAGCGCTCATCTACGCCATCGCCGTAGCCCGCTATTTCAAAC
TGCGCGGCAAGCCGTTACCCAAAATCGCCATCCGATACCTCTTCCTGCGCGGATTGGACGGCACGGACAACGGCGTCTGG
CAATGGGACTTGGATACCGAATCCTTGGCGCAATGGCTGTAA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(995-1191)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(18-457)

UvrD-like helicase C-terminal domain (UvrD_C)

(695-834)

UvrD-like helicase C-terminal domain (UvrD_C)

(461-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

61.995

100

0.62