Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPPN135_RS06815 Genome accession   NC_017379
Coordinates   1401397..1402710 (-) Length   437 a.a.
NCBI ID   WP_000653537.1    Uniprot ID   -
Organism   Helicobacter pylori Puno135     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1396397..1407710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPN135_RS06785 (HPPN135_06930) nadC 1396860..1397681 (-) 822 WP_000404037.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPPN135_RS06790 (HPPN135_06935) nadA 1397681..1398691 (-) 1011 WP_001141783.1 quinolinate synthase NadA -
  HPPN135_RS06795 (HPPN135_06940) - 1398681..1399484 (-) 804 WP_000561101.1 phosphatidylserine decarboxylase -
  HPPN135_RS06800 (HPPN135_06945) - 1399481..1399984 (-) 504 WP_000953076.1 DUF6115 domain-containing protein -
  HPPN135_RS06805 (HPPN135_06950) - 1399997..1400491 (-) 495 WP_014537179.1 hypothetical protein -
  HPPN135_RS06810 (HPPN135_06955) mqnP 1400484..1401368 (-) 885 WP_000913960.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPPN135_RS06815 (HPPN135_06960) comEC/comE3 1401397..1402710 (-) 1314 WP_000653537.1 ComEC/Rec2 family competence protein Machinery gene
  HPPN135_RS06820 (HPPN135_06965) - 1402707..1404173 (-) 1467 WP_000349762.1 replicative DNA helicase -
  HPPN135_RS06825 (HPPN135_06970) - 1404184..1405578 (-) 1395 WP_000954047.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPPN135_RS06830 (HPPN135_06975) crdS 1405581..1406783 (-) 1203 WP_080004610.1 copper-sensing histidine kinase CrdS -
  HPPN135_RS06835 (HPPN135_06980) crdR 1406749..1407390 (-) 642 WP_001169812.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50198.15 Da        Isoelectric Point: 9.8313

>NTDB_id=47073 HPPN135_RS06815 WP_000653537.1 1401397..1402710(-) (comEC/comE3) [Helicobacter pylori Puno135]
MKDKTFQGAFELLATPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGII
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFLKRSFQAIALS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILNMPLTIPTISISSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=47073 HPPN135_RS06815 WP_000653537.1 1401397..1402710(-) (comEC/comE3) [Helicobacter pylori Puno135]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATATTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGTTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATAATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTTTAAGATCATGCTTTTTCCAAACCTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCCAACGCTTTGGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCTATTAGCGGGTTCCATTTAGGGATTTT
GAGTGCGAGCGTGTATTTTCTTTTTTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTACTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCTTGAGTTTTAAGCTTTTGGTTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTAAAGCGATCGTTTCAAGCGATCGCTTTAAGC
GTGTTAGTGTTTTTGAACATGCTCATTATCGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTAGATCCCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTGTGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943

Multiple sequence alignment