Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   H3L95_RS03990 Genome accession   NZ_CP059566
Coordinates   814078..815835 (+) Length   585 a.a.
NCBI ID   WP_003759187.1    Uniprot ID   C6M6K5
Organism   Neisseria sicca strain DSM 17713     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 809078..820835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS03965 (H3L95_03965) cmk 809306..809965 (-) 660 WP_003759198.1 (d)CMP kinase -
  H3L95_RS03970 (H3L95_03970) - 810302..811516 (+) 1215 WP_003759194.1 uracil-xanthine permease family protein -
  H3L95_RS03975 (H3L95_03975) - 811860..812435 (+) 576 WP_003759193.1 hypothetical protein -
  H3L95_RS03980 (H3L95_03980) - 812760..813704 (+) 945 WP_003759191.1 DnaJ C-terminal domain-containing protein -
  H3L95_RS03985 (H3L95_03985) - 813716..814009 (+) 294 WP_003759190.1 chaperone modulator CbpM -
  H3L95_RS03990 (H3L95_03990) recD 814078..815835 (+) 1758 WP_003759187.1 exodeoxyribonuclease V subunit alpha Machinery gene
  H3L95_RS03995 (H3L95_03995) - 816080..817198 (+) 1119 WP_003759185.1 hypothetical protein -
  H3L95_RS04000 (H3L95_04000) - 817267..818340 (-) 1074 WP_003759183.1 sulfate/molybdate ABC transporter ATP-binding protein -
  H3L95_RS04005 (H3L95_04005) cysW 818337..819197 (-) 861 WP_003743550.1 sulfate ABC transporter permease subunit CysW -
  H3L95_RS04010 (H3L95_04010) cysT 819466..820302 (-) 837 WP_003759178.1 sulfate ABC transporter permease subunit CysT -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 63855.10 Da        Isoelectric Point: 6.3501

>NTDB_id=470729 H3L95_RS03990 WP_003759187.1 814078..815835(+) (recD) [Neisseria sicca strain DSM 17713]
MAENTADNLNLAAAQAAGHLLERCVPEHAAVLTPYVLRLFAALQNGHSFVWLDEGEAEELAGLAPSVGQGASPLVLQGRK
LFLGRMWQLEHDLAAEIKRLAEAEVEPVDWMSASQNLSGWFADKGSAGQRDAAGLALLQAFMLITGGPGTGKTTTVAKLL
GLICTNSATRLPRIALAAPTGKAAAHMARALHRAVDGFEMPEAVRNHLSVLEGQTVHRLLKLRPPQMLPAFDGNRPLPLD
VLVVDEASMLDVSLLLHLLRAIPSGCRVIFLGDEFQLPSVGVGAVLAALSRRTVLNKETAEQLSIYLPEHGFPVEENPPA
LSQNVAQLKISHRFGADSGIGCLARAVVSGKSGEGWAQFALFPNELEIREGRLKQQAELLYRKHEKYWQAVDKNDVALAF
GHAADVVVLAAWRQDAEAFNEEYCRYLQRKHRAGADTPWFAGQIIMIARNDYTLEVFNGDIGLIMPDAESANGLAAYFPN
ADGFKKIAISRLPQFDSAFAMTVHKSQGSEYREVWLLPPSGKIEQGGDDALSGLNNALLYTAITRARERFVFWGNEEQWR
LAVETRKTRRTALGEILDAMFVPKA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=470729 H3L95_RS03990 WP_003759187.1 814078..815835(+) (recD) [Neisseria sicca strain DSM 17713]
ATGGCTGAGAATACCGCCGATAATTTGAACCTTGCCGCCGCTCAAGCGGCCGGGCATTTGCTGGAGCGTTGCGTACCGGA
GCATGCTGCGGTGCTGACGCCGTATGTGTTGCGGCTGTTTGCGGCTTTGCAGAACGGGCATTCGTTTGTTTGGCTGGATG
AGGGCGAGGCGGAGGAATTGGCGGGATTGGCGCCGTCAGTCGGGCAGGGCGCGTCGCCGTTGGTGTTGCAGGGCAGAAAG
CTGTTTTTGGGGCGGATGTGGCAGCTTGAGCATGATTTGGCGGCTGAAATCAAGCGTTTGGCAGAAGCGGAAGTCGAGCC
TGTGGATTGGATGAGCGCGTCGCAAAACTTGTCCGGTTGGTTTGCCGACAAAGGCAGCGCAGGGCAGCGGGATGCGGCGG
GGCTTGCCCTGCTTCAAGCGTTTATGCTGATTACGGGCGGGCCGGGTACGGGCAAGACGACGACTGTGGCGAAACTTTTG
GGGCTGATTTGCACCAACTCTGCTACGCGCCTGCCGCGTATCGCGCTTGCCGCGCCGACGGGCAAGGCGGCGGCGCATAT
GGCGCGCGCGCTGCATCGGGCGGTGGACGGTTTCGAGATGCCGGAGGCGGTACGCAATCATTTGTCCGTACTGGAAGGGC
AGACGGTCCACCGCCTTTTGAAACTGCGCCCGCCGCAAATGCTGCCTGCGTTTGACGGCAACCGTCCGCTGCCTTTGGAT
GTGTTGGTGGTGGATGAGGCTTCGATGTTGGATGTTTCCCTGCTGCTTCACTTGCTGCGTGCGATTCCGTCGGGCTGCCG
CGTGATTTTTTTGGGCGACGAGTTCCAACTGCCCTCGGTCGGCGTCGGCGCGGTATTGGCGGCGTTGTCGAGACGGACGG
TTTTGAATAAAGAGACGGCGGAGCAACTGAGTATTTATCTGCCGGAACACGGTTTCCCCGTGGAGGAAAATCCGCCGGCT
TTGTCGCAAAACGTCGCGCAACTGAAGATCAGCCACCGTTTCGGTGCAGACAGCGGCATCGGTTGCTTGGCTAGGGCGGT
TGTATCGGGCAAGAGCGGGGAAGGTTGGGCGCAGTTTGCCTTGTTCCCCAACGAGCTGGAAATCCGCGAAGGTCGTCTGA
AACAGCAGGCGGAGCTGCTTTACCGAAAACACGAAAAATACTGGCAGGCAGTCGATAAAAACGATGTGGCGCTGGCGTTC
GGACACGCGGCGGATGTGGTCGTTTTGGCGGCATGGCGGCAGGACGCGGAGGCGTTCAACGAAGAGTATTGCCGTTATCT
GCAACGCAAACATCGGGCAGGCGCGGATACGCCGTGGTTCGCGGGACAAATCATCATGATTGCGCGCAACGACTATACGC
TGGAAGTGTTCAACGGCGACATCGGGCTGATTATGCCCGACGCGGAATCGGCGAACGGCTTGGCGGCGTATTTCCCGAAT
GCGGACGGTTTCAAAAAAATCGCCATCAGCCGCCTGCCGCAGTTTGACTCCGCGTTCGCCATGACTGTGCATAAAAGCCA
GGGTTCGGAATATCGGGAAGTCTGGCTGTTGCCGCCGTCGGGGAAAATAGAGCAGGGCGGGGATGACGCGCTGTCGGGCT
TGAACAATGCGCTGCTCTACACCGCCATCACCCGCGCGCGGGAACGCTTCGTCTTTTGGGGAAATGAAGAACAATGGCGG
CTGGCGGTGGAGACCCGCAAAACCCGCCGCACGGCATTGGGCGAAATCTTGGACGCGATGTTCGTGCCGAAAGCTTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(498-549)

AAA domain (AAA_30)

(126-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C6M6K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

63.345

96.068

0.609