Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   I6K12_RS08910 Genome accession   NZ_CP069865
Coordinates   1699933..1700400 (+) Length   155 a.a.
NCBI ID   WP_000340159.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1282     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1694933..1705400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K12_RS08865 (I6K12_08870) rplP 1695043..1695453 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  I6K12_RS08870 (I6K12_08875) rpsC 1695466..1696167 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  I6K12_RS08875 (I6K12_08880) rplV 1696185..1696517 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  I6K12_RS08880 (I6K12_08885) rpsS 1696532..1696810 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  I6K12_RS08885 (I6K12_08890) rplB 1696827..1697648 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  I6K12_RS08890 (I6K12_08895) rplW 1697666..1697968 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  I6K12_RS08895 (I6K12_08900) rplD 1697965..1698570 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  I6K12_RS08900 (I6K12_08905) rplC 1698581..1699210 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  I6K12_RS08905 (I6K12_08910) rpsJ 1699243..1699554 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  I6K12_RS08910 (I6K12_08915) pilD 1699933..1700400 (+) 468 WP_000340159.1 A24 family peptidase Machinery gene
  I6K12_RS08915 (I6K12_08920) bfr 1700397..1700873 (-) 477 WP_000675515.1 bacterioferritin -
  I6K12_RS08920 (I6K12_08925) bfd 1700946..1701140 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  I6K12_RS08925 (I6K12_08930) tuf 1701323..1702507 (-) 1185 WP_000031783.1 elongation factor Tu -
  I6K12_RS08930 (I6K12_08935) fusA 1702578..1704692 (-) 2115 WP_000124703.1 elongation factor G -
  I6K12_RS08935 (I6K12_08940) rpsG 1704789..1705259 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=470724 I6K12_RS08910 WP_000340159.1 1699933..1700400(+) (pilD) [Escherichia coli strain FDAARGOS_1282]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=470724 I6K12_RS08910 WP_000340159.1 1699933..1700400(+) (pilD) [Escherichia coli strain FDAARGOS_1282]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368