Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   H3L95_RS03045 Genome accession   NZ_CP059566
Coordinates   615954..616649 (+) Length   231 a.a.
NCBI ID   WP_003756725.1    Uniprot ID   A0A9X5PGS0
Organism   Neisseria sicca strain DSM 17713     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 610954..621649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS03030 (H3L95_03030) - 611151..612158 (-) 1008 WP_003756717.1 putative phage abortive infection protein -
  H3L95_RS03035 (H3L95_03035) uvrB 612186..614213 (-) 2028 WP_003756720.1 excinuclease ABC subunit UvrB -
  H3L95_RS03040 (H3L95_03040) dnaB 614390..615796 (+) 1407 WP_003764236.1 replicative DNA helicase -
  H3L95_RS03045 (H3L95_03045) pilH 615954..616649 (+) 696 WP_003756725.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H3L95_RS03050 (H3L95_03050) pilV 616661..617389 (+) 729 WP_052296540.1 type IV pilus modification protein PilV -
  H3L95_RS03055 (H3L95_03055) - 617389..618366 (+) 978 WP_003756728.1 PilW family protein -
  H3L95_RS03060 (H3L95_03060) pilK 618345..618959 (+) 615 WP_003756730.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H3L95_RS03065 (H3L95_03065) pilL 618972..619463 (+) 492 WP_003756733.1 PilX family type IV pilin Machinery gene

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25592.02 Da        Isoelectric Point: 9.4039

>NTDB_id=470724 H3L95_RS03045 WP_003756725.1 615954..616649(+) (pilH) [Neisseria sicca strain DSM 17713]
MYAQQKGFTLIELLVVIAITAIMATIALPNMSEWIASRRAASQAEQVANLLRFARAEAVRLNLPVYVCPVQIRKNGVPDN
KCDTKYNQSGILAYADKSGDVNYNDDRADIFLRTIVLNAKDANKVTYQFDHVKFGGKDSDSQPVFWAFQPNGTFGYSVNK
PSKKTDFTYSDGYIKISMTDSAATTESTKKSRASIVLVDSSGRVEICAKSDSRDLCKYAESKAKSNKQPQQ

Nucleotide


Download         Length: 696 bp        

>NTDB_id=470724 H3L95_RS03045 WP_003756725.1 615954..616649(+) (pilH) [Neisseria sicca strain DSM 17713]
ATGTACGCACAACAAAAAGGTTTTACCTTAATCGAATTGTTGGTCGTGATCGCTATTACCGCCATCATGGCCACTATCGC
CCTTCCCAATATGAGCGAATGGATTGCCTCCCGCCGCGCTGCCAGTCAGGCAGAACAGGTGGCAAATCTCTTGCGTTTCG
CACGAGCCGAAGCAGTCCGCCTCAATCTCCCTGTCTATGTCTGTCCCGTGCAAATCAGAAAAAACGGGGTTCCAGACAAT
AAATGTGATACCAAATACAATCAAAGTGGCATCTTGGCCTATGCTGATAAGAGTGGTGATGTTAACTACAATGATGATAG
GGCGGACATTTTCCTGCGCACTATCGTCTTAAACGCTAAGGATGCGAATAAAGTCACCTACCAATTTGATCATGTCAAAT
TCGGTGGCAAAGACTCTGATTCACAGCCTGTTTTTTGGGCATTTCAACCGAACGGTACTTTTGGCTATTCTGTCAATAAA
CCCAGTAAAAAAACTGATTTTACCTACTCGGACGGCTATATCAAAATCAGCATGACCGATTCCGCCGCAACCACAGAAAG
CACCAAAAAGTCTCGTGCCAGCATTGTGTTGGTCGACAGTAGCGGACGAGTAGAAATCTGCGCCAAGTCAGATTCACGCG
ATCTCTGTAAATATGCAGAATCTAAAGCAAAATCCAACAAACAACCCCAACAATAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(43-192)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

56.019

93.506

0.524